Gene Pden_1400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1400 
Symbol 
ID4581265 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1369014 
End bp1371131 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content65% 
IMG OID639768716 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_915197 
Protein GI119384141 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.118949 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACG TCGAAGACCT CATCGCGCTT ATCCGCAATT ACAACCCGCG CACCAATGCC 
GAACTGATCC GCAACGCCTA TGAATACGGG CGTCGCATGC ATGAAGGACA GTTCCGGCAC
TCGGGTGAGC CCTATTTCAC CCATCCCGTC GCTGTCGCCG CCATCCTGAC CGAAATGCGG
CTGGACGATG CCACCATCGT CACCGCATTG CTGCATGACA CGATCGAGGA CACCCGCTCG
ACCTGGGCCG AGGTGGCGCA TATCTTCGGG CGCGAGATCG CCGATCTGGT CGATGGGGTC
ACCAAGCTGA CCAATCTGCA ACTCTCGGGC GCGCATTCCA AGCAGGCCGA GAATTTCCGC
AAGCTTTTCA TGGCTATGTC GCGCGATCTT CGCGTGATCC TGGTCAAGCT TGCCGACCGG
CTGCACAATA TGCGGACGAT CAAGTCCATG CGCCCCGACA AGCAGTCGCA GAAGGCGCGC
GAGACCATGG ACATCTATGC GCCGCTTGCC GGCCGCATGG GCATGCAATG GATGCGCGAG
GAACTGGAGG ACCTGGCCTT CAAGGTCATC AATCCCGAAG CGCGCAATTC GATCATCCGC
CGCTTCGTCA GCCTGCAGCG CGAATCCGGC GACGTGATCC CCAAGATCAC CGCCGATATC
CGCGCCGAGC TGGAGCGCGA GGGGATCGAG GCCGATGTCT ATGGCCGCGC CAAGCGCCCC
TTCAGCATCT GGCGCAAGAT GCAGGAAAAG CAGCTTTCCT TCTCGCGCCT GTCCGACATC
TACGGCTTTC GCATCATCAC CCGGACCGAG CCGGACTGCT ATCGCACGCT GGGCGTGATC
CATCACCGCT GGCGCGCGGT GCCGGGCCGG TTCAAGGATT ACATCAGCCA GCCCAAGGCG
AACGGCTACC GCTCGATCCA CACCACCGTC TCGGGCCGCG ACGGCAAGCG GGTCGAGGTG
CAGATCCGCA CCCGCCAGAT GCACGAAGTG GCCGAGGCGG GCGTGGCCGC GCACTGGGCC
TATCGTGACG GGGTGCGCAC GGCGAACCCC TTTGCCGTCG ATCCGGGCGA ATGGATCGCC
AGCCTGACCG AGCGTTTCGG CGAAGAGGAT CACGACGAGT TCCTGGAACA CGTCAAGCTG
GAAATGTATT CCGACCAGGT GTTCTGCTTC ACGCCCAAGG GCGACGTGAT CCCGCTGCCC
AAGGGCGCGA CGCCACTGGA TTTCGCCTAT GCGATCCATA CCCGGCTGGG GTCGTCCTGC
GTCGGTGCCA AGGTGGACGG CATCCGCGTG CCGCTGTGGA CCCGGCTCAA GAACGGGCAG
TCGGTCGATA TCATTTCGGC CTCGGGCCAG CGCCCGCAGG CGACCTGGCT CGACATCGTG
GTCACCGGCC GGGCCAAGGC GGCCATTCGC CGCTCGCTGC GGCAAGAGGA CCGGACCCGC
TTCATCCGCC TCGGCTCGGA ACTGGTGCGG GTGGCCTTCG AACATGTCGG GCGCAAGGTC
AGCGACAAGG CGCTGCGCAC CGCCGCCAAG ACCATGGCGC TGCCCGATAC GGACGAATTG
CTGGCGCGGA TCGGCAGCGC CGAGATCTCG GCCCATGACG TGCTGACCAC GCTTTACCCC
GAGCTCGCCG AAAAGCGCAG CGAGATCGAC GCCCGGCGCG CGGTGGCGGG GCTGGAGGCG
GATCAGGAAT TCACCCGCGC GCCCTGCTGC AACCCGCTGC CGGGCGAGCG CATCGTCGGC
ATCACCTATC GCGGCAAGGG CGTGGTGATC CATGCCATCG ACTGCCCGGT GCTGGCCGAG
TTCGAGGACA GCCCGGAACG CTGGGTCGAC CTGCATTGGC GCGAGGGCCA GCACCCGGCG
GCCTATTCGA CCATGCTGTC CCTGACCATC CGCCACGATG CCGGCGTGCT GGGCCGCATC
TGCACGCTGA TCGGCGCGCA GGGGGCGAAT ATCTCGGATC TGGAATTCAT CGATCGCAAG
CCGGATTTCT ATCGCCTGCG AGTCGAGGTC GAGTTGCGCG ACCGCGAGCA TCTGCATGCG
CTGCTGACCG CGCTGGAAAC CGAAAGCGAC GTGGCCCAGG TCTCGCGCAT CCGGGATCCT
TCCGCCCATA TGAACTGA
 
Protein sequence
MIDVEDLIAL IRNYNPRTNA ELIRNAYEYG RRMHEGQFRH SGEPYFTHPV AVAAILTEMR 
LDDATIVTAL LHDTIEDTRS TWAEVAHIFG REIADLVDGV TKLTNLQLSG AHSKQAENFR
KLFMAMSRDL RVILVKLADR LHNMRTIKSM RPDKQSQKAR ETMDIYAPLA GRMGMQWMRE
ELEDLAFKVI NPEARNSIIR RFVSLQRESG DVIPKITADI RAELEREGIE ADVYGRAKRP
FSIWRKMQEK QLSFSRLSDI YGFRIITRTE PDCYRTLGVI HHRWRAVPGR FKDYISQPKA
NGYRSIHTTV SGRDGKRVEV QIRTRQMHEV AEAGVAAHWA YRDGVRTANP FAVDPGEWIA
SLTERFGEED HDEFLEHVKL EMYSDQVFCF TPKGDVIPLP KGATPLDFAY AIHTRLGSSC
VGAKVDGIRV PLWTRLKNGQ SVDIISASGQ RPQATWLDIV VTGRAKAAIR RSLRQEDRTR
FIRLGSELVR VAFEHVGRKV SDKALRTAAK TMALPDTDEL LARIGSAEIS AHDVLTTLYP
ELAEKRSEID ARRAVAGLEA DQEFTRAPCC NPLPGERIVG ITYRGKGVVI HAIDCPVLAE
FEDSPERWVD LHWREGQHPA AYSTMLSLTI RHDAGVLGRI CTLIGAQGAN ISDLEFIDRK
PDFYRLRVEV ELRDREHLHA LLTALETESD VAQVSRIRDP SAHMN