Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1400 |
Symbol | |
ID | 4581265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 1369014 |
End bp | 1371131 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639768716 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_915197 |
Protein GI | 119384141 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.118949 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCGACG TCGAAGACCT CATCGCGCTT ATCCGCAATT ACAACCCGCG CACCAATGCC GAACTGATCC GCAACGCCTA TGAATACGGG CGTCGCATGC ATGAAGGACA GTTCCGGCAC TCGGGTGAGC CCTATTTCAC CCATCCCGTC GCTGTCGCCG CCATCCTGAC CGAAATGCGG CTGGACGATG CCACCATCGT CACCGCATTG CTGCATGACA CGATCGAGGA CACCCGCTCG ACCTGGGCCG AGGTGGCGCA TATCTTCGGG CGCGAGATCG CCGATCTGGT CGATGGGGTC ACCAAGCTGA CCAATCTGCA ACTCTCGGGC GCGCATTCCA AGCAGGCCGA GAATTTCCGC AAGCTTTTCA TGGCTATGTC GCGCGATCTT CGCGTGATCC TGGTCAAGCT TGCCGACCGG CTGCACAATA TGCGGACGAT CAAGTCCATG CGCCCCGACA AGCAGTCGCA GAAGGCGCGC GAGACCATGG ACATCTATGC GCCGCTTGCC GGCCGCATGG GCATGCAATG GATGCGCGAG GAACTGGAGG ACCTGGCCTT CAAGGTCATC AATCCCGAAG CGCGCAATTC GATCATCCGC CGCTTCGTCA GCCTGCAGCG CGAATCCGGC GACGTGATCC CCAAGATCAC CGCCGATATC CGCGCCGAGC TGGAGCGCGA GGGGATCGAG GCCGATGTCT ATGGCCGCGC CAAGCGCCCC TTCAGCATCT GGCGCAAGAT GCAGGAAAAG CAGCTTTCCT TCTCGCGCCT GTCCGACATC TACGGCTTTC GCATCATCAC CCGGACCGAG CCGGACTGCT ATCGCACGCT GGGCGTGATC CATCACCGCT GGCGCGCGGT GCCGGGCCGG TTCAAGGATT ACATCAGCCA GCCCAAGGCG AACGGCTACC GCTCGATCCA CACCACCGTC TCGGGCCGCG ACGGCAAGCG GGTCGAGGTG CAGATCCGCA CCCGCCAGAT GCACGAAGTG GCCGAGGCGG GCGTGGCCGC GCACTGGGCC TATCGTGACG GGGTGCGCAC GGCGAACCCC TTTGCCGTCG ATCCGGGCGA ATGGATCGCC AGCCTGACCG AGCGTTTCGG CGAAGAGGAT CACGACGAGT TCCTGGAACA CGTCAAGCTG GAAATGTATT CCGACCAGGT GTTCTGCTTC ACGCCCAAGG GCGACGTGAT CCCGCTGCCC AAGGGCGCGA CGCCACTGGA TTTCGCCTAT GCGATCCATA CCCGGCTGGG GTCGTCCTGC GTCGGTGCCA AGGTGGACGG CATCCGCGTG CCGCTGTGGA CCCGGCTCAA GAACGGGCAG TCGGTCGATA TCATTTCGGC CTCGGGCCAG CGCCCGCAGG CGACCTGGCT CGACATCGTG GTCACCGGCC GGGCCAAGGC GGCCATTCGC CGCTCGCTGC GGCAAGAGGA CCGGACCCGC TTCATCCGCC TCGGCTCGGA ACTGGTGCGG GTGGCCTTCG AACATGTCGG GCGCAAGGTC AGCGACAAGG CGCTGCGCAC CGCCGCCAAG ACCATGGCGC TGCCCGATAC GGACGAATTG CTGGCGCGGA TCGGCAGCGC CGAGATCTCG GCCCATGACG TGCTGACCAC GCTTTACCCC GAGCTCGCCG AAAAGCGCAG CGAGATCGAC GCCCGGCGCG CGGTGGCGGG GCTGGAGGCG GATCAGGAAT TCACCCGCGC GCCCTGCTGC AACCCGCTGC CGGGCGAGCG CATCGTCGGC ATCACCTATC GCGGCAAGGG CGTGGTGATC CATGCCATCG ACTGCCCGGT GCTGGCCGAG TTCGAGGACA GCCCGGAACG CTGGGTCGAC CTGCATTGGC GCGAGGGCCA GCACCCGGCG GCCTATTCGA CCATGCTGTC CCTGACCATC CGCCACGATG CCGGCGTGCT GGGCCGCATC TGCACGCTGA TCGGCGCGCA GGGGGCGAAT ATCTCGGATC TGGAATTCAT CGATCGCAAG CCGGATTTCT ATCGCCTGCG AGTCGAGGTC GAGTTGCGCG ACCGCGAGCA TCTGCATGCG CTGCTGACCG CGCTGGAAAC CGAAAGCGAC GTGGCCCAGG TCTCGCGCAT CCGGGATCCT TCCGCCCATA TGAACTGA
|
Protein sequence | MIDVEDLIAL IRNYNPRTNA ELIRNAYEYG RRMHEGQFRH SGEPYFTHPV AVAAILTEMR LDDATIVTAL LHDTIEDTRS TWAEVAHIFG REIADLVDGV TKLTNLQLSG AHSKQAENFR KLFMAMSRDL RVILVKLADR LHNMRTIKSM RPDKQSQKAR ETMDIYAPLA GRMGMQWMRE ELEDLAFKVI NPEARNSIIR RFVSLQRESG DVIPKITADI RAELEREGIE ADVYGRAKRP FSIWRKMQEK QLSFSRLSDI YGFRIITRTE PDCYRTLGVI HHRWRAVPGR FKDYISQPKA NGYRSIHTTV SGRDGKRVEV QIRTRQMHEV AEAGVAAHWA YRDGVRTANP FAVDPGEWIA SLTERFGEED HDEFLEHVKL EMYSDQVFCF TPKGDVIPLP KGATPLDFAY AIHTRLGSSC VGAKVDGIRV PLWTRLKNGQ SVDIISASGQ RPQATWLDIV VTGRAKAAIR RSLRQEDRTR FIRLGSELVR VAFEHVGRKV SDKALRTAAK TMALPDTDEL LARIGSAEIS AHDVLTTLYP ELAEKRSEID ARRAVAGLEA DQEFTRAPCC NPLPGERIVG ITYRGKGVVI HAIDCPVLAE FEDSPERWVD LHWREGQHPA AYSTMLSLTI RHDAGVLGRI CTLIGAQGAN ISDLEFIDRK PDFYRLRVEV ELRDREHLHA LLTALETESD VAQVSRIRDP SAHMN
|
| |