| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1384 |
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| Symbol | |
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| ID | 4581307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1352030 |
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| End bp | 1355647 |
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| Gene Length | 3618 bp |
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| Protein Length | 1205 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639768700 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_915181 |
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| Protein GI | 119384125 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.034072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.508089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGATCG AACGGCGCTT CACCACGGCC GAGAGCGGGG CTTACGGCGC GCTTTCCTTT
ACCACCACCA CCAGCGAGAT CCGCAACCCG GACGGCACCG TCGTGTTTCG CAACGATTCG
GTCGAGGTGC CGCAGGGCTG GAGCCAGGTC GCCTCGGACG TGATCGCCCA GAAATACTTT
CGCAAGGCCG GCGTGCCGGC GCGTCTGAAG CGCGTCAAGG AGAAGGGCGT GCCGGAATTC
CTGTGGCGCT CGGTCCCTGA CGAGGAGGCG CTGGCGAAAC TGCCCCAGGA GGCGCGCTTC
GGCGGCGAGA CCAGCGCCCG CCAGGTCTTT GACAGGATGG CCGGCGCCTG GGCCTATTGG
GGCTGGAAGG GCGGGTATTT TTCCAGCGAG GACGACGCCC GCGCCTATTA CGACGAGATG
CGCCATATGC TGGCGGCGCA GATGGGTGCG CCGAACAGCC CGCAATGGTT CAACACCGGC
CTGCATTGGG CCTATGGCAT CGACGGTCCC GGCCAGGGCC ATTTCTATGT CGATTACAAG
ACGGGCAAGC TGGTCCGGTC GGACAGCGCC TATGAGCATC CCCAGCCCCA TGCCTGCTTC
ATCCAGTCCG TCGCCGACGA CCTGGTGAAC GAGGGCGGCA TCATGGACCT GTGGGTCCGC
GAGGCGCGGC TGTTCAAATA CGGCTCGGGC ACGGGCACCA ATTTTTCGTC CCTGCGAGGG
GAGGGCGAGA AACTGTCGGG CGGCGGGAAA TCTTCGGGGC TCATGGGCTT CCTGAAGATC
GGAGACCGCG CAGCCGGCGC GATCAAGTCG GGCGGAACGA CCCGGCGCGC GGCAAAGATG
GTGATCTGCG ACATGGATCA CCCCGACATC GAGCAGTTCA TCAACTGGAA GGTCATAGAA
GAGCAGAAGG TCGCCTCGCT GGTGGCGGGC TCGAAGATGC ATGAGCGCGA GCTGAATGCC
ATCTTTGCCG CCATCCGCGA ATGGGACGGC AGCGTCGAGG ATGCCACCGA TCCGGCGAAG
AATGCTGTGC TGAAATCGGC CATCCGTTCG GCAAAACGCG TGATGATCCC GGAGACCTAT
ATCAACCGGG TTCTTCAATA TGCCCGGCAG GGCTTTGATT CGATTGAATT CCCGACCTAC
GATACCGATT GGGACTCGGA AGCCTATGTC TCGGTCTCGG GCCAGAACTC CAACAACTCG
GTGCGGGTGA CGGATGCCTT CCTGCGGGCC GTGCGCGACG ACCTGCCCTG GGAACTGGTC
CGGCGCACCG ACGGCAAGGT GGCCAAGACC GTCTCGGCGC GCGAGCTATG GGACCAGATC
GGCCATGCCG CCTGGGCCTG CGCCGATCCG GGCATCCAGT TCCACGACAC CGTCAACGCC
TGGCATACCT GTCCCGAGGA CGGGGCGATC CGCGGCTCGA ACCCGTGCAG CGAATACATG
TTCCTGGACG ATACGGCCTG CAACCTGGCC TCGATGAACC TGCTGAGCTT CTGGAGCGGC
AAGGAATTCG ACGCCGACGG CTATGTGCAT GCCAGCCGGC TGTGGACAGT CACGCTGGAA
ATCTCGGTCA TGATGGCGCA GTTCCCCAGC AAGGAGATCG CGCAGCGCAG CTATGATTTC
CGCACCCTGG GCCTGGGCTA TGCCAATATC GGCGGGCTCT TGATGAACAT GGGCCTTGGC
TATGACAGCG ACGAGGGCAG GGCGCTTTGC GGTGCGCTGA CTGCGGTCAT GACCGGGGTG
AGCTATGCCA CCTCGGCCGA GATGGCGGCG GAACTGGGGC CGTTCCCCGG CTATGGCAAG
AACGCCCAGC ACATGCTGCG GGTGATCCGC AACCACCGCG CGGCCGCCTA TGGCACAGGC
GCCTATGAGG GCGTGAACGT GCGCCCGGTG GAACTGGATA CCGCGAACTG CCCCGATCCG
CGCCTAGTGG CGCTGGCGCA GGGCGCCTGG GACGAGGCGC TGACGCTGGG CGAGGCGCAT
GGTTATCGCA ACGCCCAGGC CACGGTGATC GCACCGACCG GCACCATCGG GCTGGTGATG
GATTGCGACA CCACCGGCAT CGAGCCCGAT TTCGCGCTGG TGAAGTTCAA GAAGCTGGCC
GGCGGCGGCT ATTTCAAGAT CATCAACCGC TCGGTCCCCG CTGCGCTGGA GACGCTGGGC
TACGGCTCGG CCCAGATCGA GGAAATCATC GCCTATGCGG TGGGTCATGC CAGCCTTGGC
AACTGCCCGG GCATCAACCA TGCCAGCCTG ATCGGCCACG GCTTCGGCCC GCGCGAGCTG
GAAAAGGTCG ATGCGGCGCT GGCCTCGGCC TTCGACATCC GCTTCGTCTT CAACCAGTGG
ACGCTGGGCG AAGCCTTCTG CCGCGAAACG CTGGGCATCC CGGCGGAAAG GCTGAACGAC
CCGACCTTCG ACCTGCTGCG GCACCTGGGC TTTACCCGGG CGCAGATCGA TGCGGCGAAC
GACCATGTCT GCGGCACCAT GACGCTGGAG GGCGCGCCGC ATCTGAAGCC CGAGCACTAT
TCGGTCTTCG ACTGCGCCAA TGCCTGCGGC AAGAAGGGCA CGCGCTATCT GTCGGTGGAA
AGCCATATCC GCATGATGGC GGCGGCGCAG AGCTTCATCT CGGGCGCGAT CTCCAAGACC
ATCAACATGC CCAACTCGGC CTCCATCGCC GACGCGCTGG CCGCCTATGA GCTGAGCTGG
TCGCTGGGCA TCAAGGCCAA TGCGCTTTAC CGCGACGGCT CGAAACTGTC GCAGCCGCTG
GCCTCGGCGC TGGTCGAGGA CGACGAGGAG GCCGAGGAGA TCCTGGCCAC CGGCAGCGCG
CAGGAAAAGG CCGCGGTCCT GGCCGAGAAG ATCGTCGAGC GGATCATCGT CAAGGAGGCG
GTGCGCAACC ATCGCGAAAA GCTGCCGCAG CGCCGCAAGG GCTATACCCA GAAGGCGGTG
ATCGGCGGGC ACAAGGTCTA TCTTCGCACC GGCGAATACG ACGACGGCAA GCTGGGCGAG
ATATTCATCG ACATGCACAA GGAAGGCGCG GGCTTCCGGG CGATGATGAA CAATTTCGCC
ATCGCCGTGT CGGTGGGCCT GCAATATGGC GTGCCGCTGG AGGAATTCGT CGACGCCTTC
ACCTTCACCC GCTTCGAGCC GGCGGGCATG GTGCAGGGCA ATGACAGCAT CAAGAACGCG
ACCTCGATCC TGGACTACGT GTTCCGCGAA CTGGCGGTCT CCTATCTGGA CCGCACGGAT
CTGGCGCATG TGAAGCCGCA GGGCGCGCGT TTCGACGACC TGGGCGGCGG CGAGGCCGAG
AGCCAGCCCA ATGTCGCGCC GGTCAGCGAG GGCGCCTCGC GTTCGCTGGA GATGCTCAAG
CAGATCAGTT CGACCGGCTA TCTGCGCAAG CGGCTGCCGC AGGATCTGGT GGCGCTTCAG
GCCGGCGTCT CGGTCGCGGC GGTCTCGACC GCAGAAGGGG CGGCGGCGGT GGGGGTCGTG
ACCATGGACG CGCGTGCCAA GGCCCGGATG CAGGGCTATG AGGGCGATCC CTGCGGCGAA
TGCGGCAACT ATACGCTGGT CCGCAACGGC ACCTGCATGA AGTGCAACAC CTGCGGCGCG
ACCAGCGGTT GCAGCTGA
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| Protein sequence | MRIERRFTTA ESGAYGALSF TTTTSEIRNP DGTVVFRNDS VEVPQGWSQV ASDVIAQKYF
RKAGVPARLK RVKEKGVPEF LWRSVPDEEA LAKLPQEARF GGETSARQVF DRMAGAWAYW
GWKGGYFSSE DDARAYYDEM RHMLAAQMGA PNSPQWFNTG LHWAYGIDGP GQGHFYVDYK
TGKLVRSDSA YEHPQPHACF IQSVADDLVN EGGIMDLWVR EARLFKYGSG TGTNFSSLRG
EGEKLSGGGK SSGLMGFLKI GDRAAGAIKS GGTTRRAAKM VICDMDHPDI EQFINWKVIE
EQKVASLVAG SKMHERELNA IFAAIREWDG SVEDATDPAK NAVLKSAIRS AKRVMIPETY
INRVLQYARQ GFDSIEFPTY DTDWDSEAYV SVSGQNSNNS VRVTDAFLRA VRDDLPWELV
RRTDGKVAKT VSARELWDQI GHAAWACADP GIQFHDTVNA WHTCPEDGAI RGSNPCSEYM
FLDDTACNLA SMNLLSFWSG KEFDADGYVH ASRLWTVTLE ISVMMAQFPS KEIAQRSYDF
RTLGLGYANI GGLLMNMGLG YDSDEGRALC GALTAVMTGV SYATSAEMAA ELGPFPGYGK
NAQHMLRVIR NHRAAAYGTG AYEGVNVRPV ELDTANCPDP RLVALAQGAW DEALTLGEAH
GYRNAQATVI APTGTIGLVM DCDTTGIEPD FALVKFKKLA GGGYFKIINR SVPAALETLG
YGSAQIEEII AYAVGHASLG NCPGINHASL IGHGFGPREL EKVDAALASA FDIRFVFNQW
TLGEAFCRET LGIPAERLND PTFDLLRHLG FTRAQIDAAN DHVCGTMTLE GAPHLKPEHY
SVFDCANACG KKGTRYLSVE SHIRMMAAAQ SFISGAISKT INMPNSASIA DALAAYELSW
SLGIKANALY RDGSKLSQPL ASALVEDDEE AEEILATGSA QEKAAVLAEK IVERIIVKEA
VRNHREKLPQ RRKGYTQKAV IGGHKVYLRT GEYDDGKLGE IFIDMHKEGA GFRAMMNNFA
IAVSVGLQYG VPLEEFVDAF TFTRFEPAGM VQGNDSIKNA TSILDYVFRE LAVSYLDRTD
LAHVKPQGAR FDDLGGGEAE SQPNVAPVSE GASRSLEMLK QISSTGYLRK RLPQDLVALQ
AGVSVAAVST AEGAAAVGVV TMDARAKARM QGYEGDPCGE CGNYTLVRNG TCMKCNTCGA
TSGCS
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