Gene Pden_1197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1197 
Symbol 
ID4580080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1169763 
End bp1171799 
Gene Length2037 bp 
Protein Length678 aa 
Translation table11 
GC content68% 
IMG OID639768513 
ProductNADH:flavin oxidoreductase/NADH oxidase 
Protein accessionYP_914998 
Protein GI119383942 
COG category[C] Energy production and conversion 
COG ID[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.415933 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAACG ATCCCCTTTT GCAGCCCTAT CGGCTGAAGC ACCTGACGCT GCGCAACCGC 
ATCATGATCA CCAGCCACGA GCCGGCCTAT CCCGAGGACG GCATGCCCAA GGACCGCTAT
CGCGCCTATC ACGTCGAGCG GGCGAGGGCC GGCGTGGCGC TGACCATGAC CGCCGGCTCG
GCCTCGGTCT CGCGCGACAG CCCGCCGGTC TTCAACAACA TCCTGGCCTG GAAGGACGAG
GTGGTCGGCT GGATGAAGCG GCTGACCGAC GAATGCCACG ACCACGGCTG CGCGGTGATG
ATCCAGCTGA CCCATCTGGG CCGGCGCACG CGCTGGGACA AGGCCGACTG GCTGCCCGTC
GTCTCGCCCA GCCATGAGCG CGAGGCGGCG CATCGCTCGT TCCCGAAGAG GATGGAGGAC
TGGGACATCG ACCGCATCAT CGCCGACTAT GTCGATGCGG CCGAGCGGAT GAAGGCAGCG
GGGCTGGACG GGCTGGAGCT GCAGGCCTAT GGCCACCTGA TGGACCAGTT CTGGTCGCCG
CTGACCAACG ACCTGGACGG GTCCTATGGC GGCAGCCTGG ACAATCGGCT GCGCTTCACC
TTCGACGTGC TGCGCGGCAT CCGCGAGCGC TGCGGCGAGG ATTTCATCCT GGGCGTGCGC
TATACCGGTG ACGAGGACCT GCCGGGCGGG CTGACGGCCG AGGACGGGCT GGCGATCTCG
CAAAAGCTCA AGGACAGCGG GCTGGTCGAC TTCCTGAACG TGGTCAAGGG CCATATCGAC
ACCGATGCCG GGCTGACCGA CGTGATCCCG GTGCAGGGGA TGCGCAACGC CCCGCATCTG
GAATTCGCCG GGCAGATCCG CAAGGCCACG GGCTTTCCGA CCTTCCACGC CGCCAAGATC
CCCGACGTGC CGACCGCGCG CCACGCCATC GCCGCAGGGC TGCTGGACAT GGTGGGCATG
ACGCGGGCGC ATATGGCCGA CCCGCATCTG GTCCGCAAGG TCGTCGAGGG GCGCGAGGAC
GACATCCGCC CCTGCGTCGG CGCGAACTAT TGCCTCGACC GCATCTACCA GGGCGGCATG
GCCTTTTGCC TGCACAACGC GGCAACCGGG CGCGAGCAGA CCATGCCGCA GACCATCCCG
CCCGCCCCGG CGAAGAAGCG CATCACCATC GTCGGCGCCG GTCCGGCCGG GATGGAGGCC
GCCCGCGTCG CTGCCGAGCG TGGCCACGAG GTCACCGTCT TCGAGGCCGC CGACCAGCCC
GGCGGCCAGA TCCGCCTGAC CGCCCTGGAC GAGCGGCGCC GCGAGATGAT CTCGATCATC
GCCTGGCGCA TGGCGCAATG CGAGAAGCAC GGCGTGAAGT TCAACTTCAA CACCTTCGCC
GATGCGGCCG ACGTGCTGGC CACCGAGCCC GACGAGGTGA TCGTCGCCAC CGGCGGGCTG
CCGCATGTCG AGGTGCTGGA GGCGGGCAAC GAGTTGGTCG TTTCGGCCTG GGACATCCTG
TCGGGCGACG TGAAGCCGGG CCGCAACGTG CTGGTCTATG ACGATGCCGG CGACCACGCG
GCGCTGCAGG CCGCCGACCT GATCTCGGCC ACCGGCGCCG CGGTCGAGAT CGTGACGCCG
GACCGCAGCT TCTCGCCCGA GGTGATGGCG ATGAACCTGG TGCCCTATAT GCGCAACCTG
CAAAAGCGCG ACACCACCTT TACGGTGACA TGGCGTCTTC GGTCGGTCGC GCGCGAGGGC
AACCAGTTGC GCGCCATCCT GGGCAGCGAT TACGGCGCCT TTGCCCGCGA GCGCATCGTG
GATCAGGTGG TAGTCAACCA TGGCACGCGG CCGCTGGACG AGCTTTACTT CGACCTGAAG
CCGCTGTCCT CGAACCTGGG CGAGGTTGAT TACGAGGTCC TGACCACCGG CGGGTTGCAG
GAGGTTCGCA AGAACCCTGA AGGCAAGTTC CGCCTCTACC GCATCGGCGA TGCGGTGGCC
GCCCGCAACA CCCATGCCGC GATCTACGAC GCATTGCGGC TGGTCAAGGA TCTGTGA
 
Protein sequence
MSNDPLLQPY RLKHLTLRNR IMITSHEPAY PEDGMPKDRY RAYHVERARA GVALTMTAGS 
ASVSRDSPPV FNNILAWKDE VVGWMKRLTD ECHDHGCAVM IQLTHLGRRT RWDKADWLPV
VSPSHEREAA HRSFPKRMED WDIDRIIADY VDAAERMKAA GLDGLELQAY GHLMDQFWSP
LTNDLDGSYG GSLDNRLRFT FDVLRGIRER CGEDFILGVR YTGDEDLPGG LTAEDGLAIS
QKLKDSGLVD FLNVVKGHID TDAGLTDVIP VQGMRNAPHL EFAGQIRKAT GFPTFHAAKI
PDVPTARHAI AAGLLDMVGM TRAHMADPHL VRKVVEGRED DIRPCVGANY CLDRIYQGGM
AFCLHNAATG REQTMPQTIP PAPAKKRITI VGAGPAGMEA ARVAAERGHE VTVFEAADQP
GGQIRLTALD ERRREMISII AWRMAQCEKH GVKFNFNTFA DAADVLATEP DEVIVATGGL
PHVEVLEAGN ELVVSAWDIL SGDVKPGRNV LVYDDAGDHA ALQAADLISA TGAAVEIVTP
DRSFSPEVMA MNLVPYMRNL QKRDTTFTVT WRLRSVAREG NQLRAILGSD YGAFARERIV
DQVVVNHGTR PLDELYFDLK PLSSNLGEVD YEVLTTGGLQ EVRKNPEGKF RLYRIGDAVA
ARNTHAAIYD ALRLVKDL