| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1196 |
|---|
| Symbol | |
|---|
| ID | 4580079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1168970 |
|---|
| End bp | 1169614 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639768512 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_914997 |
|---|
| Protein GI | 119383941 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.228936 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACC AAGTTGCTCC CGAAGCCGCC CTCCCCGAGA CCGGCTGGCG CGGATCGCGC
GAGGGCTGGC TGGAGGCCGG CTACCAAGCG CTGATCGACG GCGGCATCGA TGCGGTAAAG
ATCCTGCCGC TGGCCCGGCG GCTGAACCTG TCGCGCACCA GCTTCTACTG GTTCTTCGAG
GATCGCGAGG CGCTGCTGAC CGCGCTGATC GACGGCTGGG AGGAACGGAC GACCTTCCCC
CTGATCCGGG CGTCTTTGGA ATATGCCGAA ACGCTGGCCG AGGGGATGCT GAACGTTCTG
GCGTGTTTTC TGTCTGGTGC CTTTGACGCG CGGCTGGAAT TCGCGGTGCG CAGCTGGGCC
TTGCAGGACG GCAAGGTCGG CACGCGCGTT GCGGCGGCGG ACGAGACGCG GCTCTCGGCG
CTGCGCGGGA TGCTGGCGCG CTGGGGGCAT GGGGAGCAGG AGGCCGACGT GCGGGCGCGG
ACCATCTACC TGACGCAGAT CGGCTATATC TCGATGCGGG CGCAGGAAGG GCTGGAGACG
CGGCTGGCGC GCATCCCGAC CTATGTCGAG ATCTATACCG GGCAGGCCGC CGAGCCGCGC
GAGCTCGCCC GCTTCAACGC CCGCCTGGCC CCGGTGCCGC GATGA
|
|---|
| Protein sequence | MENQVAPEAA LPETGWRGSR EGWLEAGYQA LIDGGIDAVK ILPLARRLNL SRTSFYWFFE
DREALLTALI DGWEERTTFP LIRASLEYAE TLAEGMLNVL ACFLSGAFDA RLEFAVRSWA
LQDGKVGTRV AAADETRLSA LRGMLARWGH GEQEADVRAR TIYLTQIGYI SMRAQEGLET
RLARIPTYVE IYTGQAAEPR ELARFNARLA PVPR
|
|---|
| |