| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1139 |
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| Symbol | |
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| ID | 4578874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 1113565 |
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| End bp | 1115775 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639768458 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_914943 |
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| Protein GI | 119383887 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.489697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCAAG ACAGCCCTCG AATACCTGAG TTAATAGCTC GGAAACATTC GCGGACAGAA
CAAATGATCA AGATGAACAA AGCCCAACCC CTTCTCCTTG GCGTCAGCCT GCTCGCCATC
GCGGCGACCG GCGCCTTCGC GCAGGAACGC AACGACCCCC GCCAGACCTT CATGGGTGCG
GTCGTGCTGG ATACCGTCAC GATCGAGGGG TTCGAGAACC CCAGCGCGCC GCTGGACGGC
ACGGTGGCCC ATTCCTCGGC CACGACCAAG ACCCGCCGGC CGATCCTCGA GACGCAATCC
TCGGTCTCGG TCGTGCCGCG CAAGCAGATG GACGAGCAGG GCGCGACGAA CCTCTCCGAT
GCGCTGGGCT ATTCCGCCGG GATCATCACC GAGAATTATG GCAACGATCC GCGCTTCGAC
AGCCTTTATC TGCGCGGCTT CAACCTTGAA AACGACAAGT TCCTGGACGG GCTGCGCCTG
ATGCGCTCGA CCCAGTTCCC GACCAGCGCG CCCGCCTTCG AGCTTTACGG GCTGGAGCGG
GTCGAGGTGC TGCGCGGCCC GGCCTCGGTG CTCTACGGGG CGGGGACTCC TGCGGGCCTG
GTCAACATGA TCCAGAAGCG GGCGCAGGCG GATGGCGACT TCACCGAACT GGGCTTCAGC
CTGGACAGCA AGGGCTCGGC CTCGGTCTAT GGGGATGCGA ACCGGGTGGT CGATGACCGC
TTCGCCTATC GCGTCACGTC CAAGGGCGGC AATGCCAGGA CCGATGTCGA GGAAATCGAC
AACCTGCGCG GCTATCTGGG CCTGTCGGCC AGCTATGCGC TGAGCGAGGC GACCGAGCTG
GAGTTCATGG CCAGCTATCA CGGCGACGCG CCGATCTCGC CCACGGGGGT GCCCAGCGGA
CTGGTGGGCC TGGTCGATGC CAAGGATCTG CGCGAGTTCT ATTTCGGCGA CGAGTCGATC
AATGACAGCG ACCGCAAGAT GGGCACGCTC AGCTTTGGCC TGACGCATGA TTTCGGCAAT
GGCTGGCGGT TGAACAATAC GCTGCGCTAT ACCGATTTCG ACTGGGATTA TGACAGCGTG
TATATCAGCG GGCTGACCGG CACCTCGGTC GGGCGGGGCG TCATCACCCA GCGGGAAAAC
TTCCGCGCCA TCGCCACCGA CCTGCGGCTG GCGGGCAGCG CCGAAACCGG GGCCGTGTCG
CATGAACTGA CCTTTGGCCT TGATGCGCAA AAGCTGCGCG AGCGCGCCTA TACCGGCTTT
TCCACCATTG CGCCCATCGA CTATACCGCG CCGTCCTATG GGGGCATAAC CGTGCCCGCT
CCGTGGTATA CGGCGAACAA GTCCGTCGAT GCGACGCAGG TCGGTCTGTA TGCTCTGGAT
GAGATCGAAT ACGGCAACTG GCGCGCGACG GCGGGGCTGC GATACGAATG GACCCGGCAA
AAGGGCCAGA GCGTGACGAA TTTCGGCACC ACCGATTACG CCCGCGACGA CCAGCAGCTG
ACCGGCCATC TGGGCCTGGG CTATCTGTGG GACAACGGCG TTTCGGTCTA TGCCGCCTAT
TCGACCTCGT ATCTGCCGCA GCCCAACTTC GACATTGACG GCAATCCCTT GAAGCCGACC
CATGGCAAGC AGTTCGAACT GGGCGCCAAA TACGAACCCG CCGCCTTTGA CGGGCTGTTC
ACCGCCGCGC TTTACGAGCT GCGCGAGACC GATCGCAACA CCACCGTCAC CGAAGAGATC
GGCGGGCGGC CGATCACCGG CACCCGCCAG ATCGGCGAGG CGCGCATTCG CGGGCTGGAA
CTGGAAGGCG TGGCCGAATT CGGCCAGGGC TGGTCGGTCA AGGGTGCCTA TACCTATGCC
TCGACCGAAA TCTCGGGCGA CAACGGCGGC AACGAACTGG CGAACACCCC GCGCCACGCG
GCCAGCCTTT GGCTGTCGCA TGAATTCCAG TCCGGCCCGA TGCAGGGGCT GCAACTGGGC
GGGGGCGTGC GTTACATCGG TTCTCGCTGG GCCTCGGACG CGAATACGCA GCGGCTCGAG
GCGGTGACAC TGCTGGATCT GGGCGCAAGC TATGAATGGG GGAACGGCCT GGTCGGCCGG
CTGAATATCA ACAACGTGAC GGATGAGACC TATATCTCGG CCGTGGGGCT GAACTCCAGC
TATTACGGCG ACGGACGCAC GGTGCAGGCA AGCCTGAGCC GTAAATGGTA G
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| Protein sequence | MVQDSPRIPE LIARKHSRTE QMIKMNKAQP LLLGVSLLAI AATGAFAQER NDPRQTFMGA
VVLDTVTIEG FENPSAPLDG TVAHSSATTK TRRPILETQS SVSVVPRKQM DEQGATNLSD
ALGYSAGIIT ENYGNDPRFD SLYLRGFNLE NDKFLDGLRL MRSTQFPTSA PAFELYGLER
VEVLRGPASV LYGAGTPAGL VNMIQKRAQA DGDFTELGFS LDSKGSASVY GDANRVVDDR
FAYRVTSKGG NARTDVEEID NLRGYLGLSA SYALSEATEL EFMASYHGDA PISPTGVPSG
LVGLVDAKDL REFYFGDESI NDSDRKMGTL SFGLTHDFGN GWRLNNTLRY TDFDWDYDSV
YISGLTGTSV GRGVITQREN FRAIATDLRL AGSAETGAVS HELTFGLDAQ KLRERAYTGF
STIAPIDYTA PSYGGITVPA PWYTANKSVD ATQVGLYALD EIEYGNWRAT AGLRYEWTRQ
KGQSVTNFGT TDYARDDQQL TGHLGLGYLW DNGVSVYAAY STSYLPQPNF DIDGNPLKPT
HGKQFELGAK YEPAAFDGLF TAALYELRET DRNTTVTEEI GGRPITGTRQ IGEARIRGLE
LEGVAEFGQG WSVKGAYTYA STEISGDNGG NELANTPRHA ASLWLSHEFQ SGPMQGLQLG
GGVRYIGSRW ASDANTQRLE AVTLLDLGAS YEWGNGLVGR LNINNVTDET YISAVGLNSS
YYGDGRTVQA SLSRKW
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