Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1115 |
Symbol | |
ID | 4580449 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 1092414 |
End bp | 1093670 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639768434 |
Product | radical SAM domain-containing protein |
Protein accession | YP_914919 |
Protein GI | 119383863 |
COG category | [H] Coenzyme transport and metabolism [R] General function prediction only |
COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
TIGRFAM ID | [TIGR00423] radical SAM domain protein, CofH subfamily [TIGR03551] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATCA TCCCCCTGCC GGCGGGCGAT CTGTCGGAAC TGCGCCACGC CAGCCCCAGG GTCCGGGCGA TTCTGGAAAA CGTCCTGTCG GGCGGCGAGG CCAGCGAGGC CGAGGGCGTC GCCCTGTTCC GCGCCGAGGG CGCCGACAAG CCCGCGCTCT ATGCCGCAGC CGACGAGATG CGCCGCCGCG CCAATGGCGA CCGGGTCAGC TTCGTCGTGA ACCGTAACAT CAACTTCACC AATATCTGCT ACATGGGTTG CCGTTTTTGC GGCTTTGCCA AGCGGTCCGA GGATGAGGGC GCCGAATTCC TGAGCCTGGG CCAGGTGGTC GCCCGCGCGC AGGAAGCCTG GGACCGCGGC GCGACCGAGG TCTGCATCCA GGGCGGGCTG CATCCGAAGA TGGAGGGCGA TCACTATCGC CGCATCGTGC TGGCGATCAA GGATGCGCTG CCCGACATGC ATATCCACGC CTTTTCGCCC TTCGAGATCT GGTATGGCGC CTCGAAGTCG AAGATGGGCT ATCACGAGTT TCTGGCCGAC CTGAAGGCGG CGGGCCTGGG CTCGATCCCC GGCACGGCGG CCGAGATCCT AGATACGGAG ATCCGCCAGC AACTGACCAG GAACAAGCTG TCCACCGAAC GCTGGGTCGA GATCGTCCGG GCCGCGCATG AGGTCGGCAT CCCCACGACC GCGACGATCA TGTACGGCCA TATCGACGGG CCGGAGCACT GGGCCGCGCA TATCGCGCTT TTGCGCAGCA TCCAGAAGGA TACGGGCGGG TTTACCGAGC TGGTGCCGCT ATCCTTCGTC CATACCGAAT CGCCCCTTTA CACGCAGGCG CCGGATCGCG TGCGCCCCGG ACCGACCGCG GATGAGGTGG ACAAGATGCA TGCCGTCAGC CGGCTGATGC TGGCCGGCTG GATCGACAAC ATCCAGGTAA GCTGGACCAA GCTGGGTCCA GCGCGCGCGC AGCAAATGCT GTCGCGGGGC GTCAACGACC TGGGCGGCAC GCTGATGAAC GAAAGCATCT CGCGTGCCGC GGGTGCCAGC CACGGGCAGG AAATCACCGC GCATGAGCTG GTGCAGATGA TCCGCGCCTC GGGCCGTGTG CCCGTGCGCC GCAGCACGGT CTACGACATC CGCGAGGTCT ATGACGACCA CGACCCGCAG GCGCTGGCCC CCCTGGTCGC GCGCAGCGGC GCCGGGCCCC TGGATTTCCT GAACATGTTC CCCGAACGCA TCGAGGCTGC CGAATGA
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Protein sequence | MTIIPLPAGD LSELRHASPR VRAILENVLS GGEASEAEGV ALFRAEGADK PALYAAADEM RRRANGDRVS FVVNRNINFT NICYMGCRFC GFAKRSEDEG AEFLSLGQVV ARAQEAWDRG ATEVCIQGGL HPKMEGDHYR RIVLAIKDAL PDMHIHAFSP FEIWYGASKS KMGYHEFLAD LKAAGLGSIP GTAAEILDTE IRQQLTRNKL STERWVEIVR AAHEVGIPTT ATIMYGHIDG PEHWAAHIAL LRSIQKDTGG FTELVPLSFV HTESPLYTQA PDRVRPGPTA DEVDKMHAVS RLMLAGWIDN IQVSWTKLGP ARAQQMLSRG VNDLGGTLMN ESISRAAGAS HGQEITAHEL VQMIRASGRV PVRRSTVYDI REVYDDHDPQ ALAPLVARSG AGPLDFLNMF PERIEAAE
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