Gene Pden_1012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1012 
Symbol 
ID4579761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp990373 
End bp991899 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content72% 
IMG OID639768334 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_914819 
Protein GI119383763 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGCTTG ACCCGCATCA CTCGCCGCAA GGCACCGTCC GCGACTGGCT CGACATCCGC 
GCCACCGAAC GGGGCGACGC CACCAGCCAC ATCTTCCCCG GCGACGGCGG CGCGCTGACC
TGGCGCGAGC TGCAGGGTGA GGCCGCCCGC ATCGCCGGGC ACCTGGCCGG GCTGGGACTG
TCCTGCGGCG ACAGCGTGGC GCTGATGTTG CCCAATGGCC GCAATGCGGT GCTGGGCCTG
TTCGGCGCGC TATACGGGGG TTTCCGCGCC ACGATGATCA ACCTGGTCGC CGGAGCCGAG
GCCGTCGGCT ATGCGCTGTC GCATTCCGGC GCCCGGGCGC TGCTGCTGGA TCCCGGCCAG
CGCGGGCTGC TCGACAGCGC GCTGGCCGCC CATCCCGCCG AACCCATGGT CATCGAGGCC
GGGGTGGGCT TCCGCTGGCC CGCCGGCTGC GAACCGGCGG CGCCGCATCC GCATGGCGCC
GAGGATGACG CGCTGCTGAT GTACACCTCG GGCACCACCG GCCGGCCCAA GGGGGTAGTG
CACAGCCATG CCAGCCTGCT GGCCGGCGGC TGGACCACGG CGCTGGCGCA TGAGTTGCAG
CCCGAGGATC GGGCGCTCTG CGTGCTGCCG ATCTATCACA TCAACGGGCT TTGCGTGACC
ATCCTGGCGC CGCTGCTCTC GGGCGGCTCG GTGGTGGTCT GCGAGCGATT CTCGGCCAGC
CAGTTCTGGG GCCTCTGCGA ACGGCACGGG GCAAGCTGGT TCTCTGTCGT GCCGACGATC
ATCTCGCATC TGTTGCATGG CGAGGGCGAG CCGTCGCCCC AGGCCCGGGC ACGGCTGCGC
TTCGGCCGCT CGGCCTCGGC GGCGCTGGCG CCCGAGGTGC AGTCGGGTTT CGAGGGCCGC
TTCGGCATTC CCATCGTCGA GACCATGGGC CTGACCGAGA CGGCGGCGCA GATCCTGTCG
AACCCGCTGC CGCCGGGCCT GCGCAAGATC GGCTCGCCCG GCCGGGCGGT GGGCAACCAG
GTGGCAATCC TGTCGCCCGA CCTGCGCCCG CTGCCGCCGG GCGCCGAGGG CGAGATCGCC
GTGCGCGGGC CCAATGTCAT GCGCGGCTAT CTGGGCGACC CGGTCGCGAC CGCCGCCGCG
CTGACCGCGG ACGGCTGGCT GCGCTCCGGC GATTTGGGCC GGATGGACGA GGAAGGCTAT
GTCTTCGTCA CCGGCCGCCT GAAGGAGCTG ATCATCAAGG GCGGCGAGAA CATCGCCCCG
CGCGAGATCG ACGAGGCGCT CTATACCCAT CCCGACGTGA TCGAGGCCGC GGCCTTCGCC
CGCAAATGCG CCCGCTACGG CGAGCGGGTC GAGGCGGCCG TCACCCTGCG CCCCGGCTCG
GCGCTGCAGC CGCCCGAACT GATCTCGATC TGCGAGGAGC GGCTGGGGGC GTTCAAGTCA
CCCGAGGTGA TCCACCTGAT GGCCGAGCTG CCCAAGGGCC CCTCGGGCAA GATCCAGCGC
CTGAAGCTGG CGCAGCTGAC GCAATAG
 
Protein sequence
MRLDPHHSPQ GTVRDWLDIR ATERGDATSH IFPGDGGALT WRELQGEAAR IAGHLAGLGL 
SCGDSVALML PNGRNAVLGL FGALYGGFRA TMINLVAGAE AVGYALSHSG ARALLLDPGQ
RGLLDSALAA HPAEPMVIEA GVGFRWPAGC EPAAPHPHGA EDDALLMYTS GTTGRPKGVV
HSHASLLAGG WTTALAHELQ PEDRALCVLP IYHINGLCVT ILAPLLSGGS VVVCERFSAS
QFWGLCERHG ASWFSVVPTI ISHLLHGEGE PSPQARARLR FGRSASAALA PEVQSGFEGR
FGIPIVETMG LTETAAQILS NPLPPGLRKI GSPGRAVGNQ VAILSPDLRP LPPGAEGEIA
VRGPNVMRGY LGDPVATAAA LTADGWLRSG DLGRMDEEGY VFVTGRLKEL IIKGGENIAP
REIDEALYTH PDVIEAAAFA RKCARYGERV EAAVTLRPGS ALQPPELISI CEERLGAFKS
PEVIHLMAEL PKGPSGKIQR LKLAQLTQ