| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0790 |
|---|
| Symbol | |
|---|
| ID | 4580614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 763653 |
|---|
| End bp | 764699 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639768109 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_914598 |
|---|
| Protein GI | 119383542 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.143813 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCG TGCAGACCAT CCGCGTCGGC GAGGACGAGG GCGAACAGCG CATCGACCGC
TGGCTGAAGA AGCGGTTTCC GCAGCTGACC CAGGGCGCGG TGGAAAAGAT GTGCCGCACC
GGCCAGCTGC GCGTCGATGG CGGCCGGGTC AAGGCCAATA CCCGCATCGA ACCCGGGCAG
GAGGTGCGCG TGCCGCCGCT GCCCGAGGGC GCGCCGCCGC CCGCCGCGCC GAAAGCGTCG
GTGAAGCAAT CCGACGCCGA GATGATCCAG TCCTGCGTTC TGTGGCGCGA CGAGCATATC
ATCGCGCTGA ACAAGCCGCC TGGCCTGCCC TCGCAGGGCG GCTCGGGGCA GGGCGACCGG
CATGTGGACG GGCTGACCAC GGCCTTGATG TTCGGCTACA AGGACCGGCC CAAGCTGGTG
CATCGGCTGG ACAAGGACAC TTCGGGCGTG CTGCTGCTGG CGCGCACCGA CCGGATCGCG
CGCGCGCTCA GCGAGGCGTT CCGCCACCGC CTGACCCGCA AGATCTATTG GGCCGCCGTG
GCGGGCGTTC CGCATCCGCG CATGGGCTCG ATCAAATACG GGCTCGTGAA GGCGCCGGGC
CGGGGCAGGG GCGGCGAGGG CGAAAAGATG ATGGCCGTGC ATCCCTCGGC CGTCGCTGCG
ACCGAGGGCG CCAAGCGTGC CCATACCGAC TATGCCGTGC TGGATGCCCT GGGCGGCCGG
GTCAGCTGGG TGGCCATGGT GCCGGTCACC GGCCGCACCC ACCAGCTGCG CGCCCACATG
GCCGAGATCG GCCATCCCAT CGTCGGCGAC GGCAAATACG GCGGCTCGGG GCAAGAGAAC
CTGGGCGACG GCTGGGGCGC CCAGCTTGGC GGAGAGATCA GCCGCAAGCT GCACCTGCAC
GCCCGCATGA TCCGGTTCGA GCATCCGATC ACCAAGAAGC TGATCACCGT CACCGCGCCC
TTGCCCGAAC ACATGAGCCG CACCTGGAAG ACGCTGGGCT GGTCGGAGAA CGACGTGCCC
GAAGACCCCT TTGCCGAGAC AGCATGA
|
|---|
| Protein sequence | MSGVQTIRVG EDEGEQRIDR WLKKRFPQLT QGAVEKMCRT GQLRVDGGRV KANTRIEPGQ
EVRVPPLPEG APPPAAPKAS VKQSDAEMIQ SCVLWRDEHI IALNKPPGLP SQGGSGQGDR
HVDGLTTALM FGYKDRPKLV HRLDKDTSGV LLLARTDRIA RALSEAFRHR LTRKIYWAAV
AGVPHPRMGS IKYGLVKAPG RGRGGEGEKM MAVHPSAVAA TEGAKRAHTD YAVLDALGGR
VSWVAMVPVT GRTHQLRAHM AEIGHPIVGD GKYGGSGQEN LGDGWGAQLG GEISRKLHLH
ARMIRFEHPI TKKLITVTAP LPEHMSRTWK TLGWSENDVP EDPFAETA
|
|---|
| |