Gene Pden_0765 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0765 
SymbolrpsC 
ID4580063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp748367 
End bp749089 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content66% 
IMG OID639768084 
Product30S ribosomal protein S3 
Protein accessionYP_914573 
Protein GI119383517 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0092] Ribosomal protein S3 
TIGRFAM ID[TIGR01008] ribosomal protein S3, eukaryotic/archaeal type
[TIGR01009] ribosomal protein S3, bacterial type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0970425 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.512197 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCAGA AGGTAAACCC CATCGGGATG CGTCTCCAGG TCAACCGCAC CTGGGACAGC 
CGCTGGTATG CGGATGACAA GGACTACGGC AATCTGCTGC TGGAAGACCT GAAGATCCGC
GACTTCATCA AGAAGGAAGC GAAGCAGGCC GGCGTCAGCC GCGTCGTGAT CGAGCGTCCG
CACAAGAAAT GCCGCGTGAC GATCTATGCC GCGCGCCCGG GTGTCATCAT CGGCAAGAAA
GGCGCCGATA TCGAGACCCT GCGCAAGAAG CTGGCGAACT TCACCGGCTC GGAACTGCAC
CTCAACATCG TCGAGGTTCG CAAGCCCGAA CTGGACGCCC AGCTGGTGGC CGAGTCGATC
GCCCAGCAGC TCGAGCGCCG GGTGTCGTTC CGCCGCGCCA TGAAGCGTGC GGTGCAGAAC
GCCATGCGCA TGGGTGCCCT GGGCATCCGG GTGAACGTGT CGGGCCGCCT TGGCGGCGCC
GAGATCGCCC GCACCGAATG GTATCGCGAG GGCCGGGTGC CGCTGCACAC GCTGCGCGCC
GACATCGACT ATGCGCTGTC GGAGGCCTCG ACCCCCTACG GGATCATCGG CGTGAAGGTC
TGGATCTTCA AGGGCGAGAT CATGGAGCAC GATCCGCAGG CCCGCGACCG CCGCGCCACC
GAAGCGCAGG ACGGCCCGTC GCCCCGCGGC CCGCGCCGTG ATCGCGACCG CGACGCGCGC
TAA
 
Protein sequence
MGQKVNPIGM RLQVNRTWDS RWYADDKDYG NLLLEDLKIR DFIKKEAKQA GVSRVVIERP 
HKKCRVTIYA ARPGVIIGKK GADIETLRKK LANFTGSELH LNIVEVRKPE LDAQLVAESI
AQQLERRVSF RRAMKRAVQN AMRMGALGIR VNVSGRLGGA EIARTEWYRE GRVPLHTLRA
DIDYALSEAS TPYGIIGVKV WIFKGEIMEH DPQARDRRAT EAQDGPSPRG PRRDRDRDAR