| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0747 |
|---|
| Symbol | rpoB |
|---|
| ID | 4579615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 727881 |
|---|
| End bp | 732029 |
|---|
| Gene Length | 4149 bp |
|---|
| Protein Length | 1382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639768066 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_914555 |
|---|
| Protein GI | 119383499 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.712795 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00979449 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAG CTTATGTCGG CCAGAAACGC ATCCGGCGTT ACTATGGCAA TATCCGCGAA
GTTCTGGAGA TGCCGAACCT GATCGAGGTT CAGAAATCCT CCTATGACCT GTTCCTGCGC
TCCGGCGACG CCGAGGGTCA CCAGGACGGC GAGGGCATCC AGGGTGTCTT CCAGTCGGTG
TTCCCGATCA AGGACTTCAA CGAGACCGCC ACGCTCGAAT TCGTGAAATA CGAGTTGGAA
AAGCCGAAAT ACGATGTGGA GGAGTGCCAG AGCCGCGACA TGACCTATGC CGCGCCGCTG
AAGGTGACGC TGCGTCTGAT CGTGTTCGAT GTCGATGAGA CCACCGGCGC CAAATCGGTC
AAGGACATCA AGGAACAGGA CGTCTACATG GGCGACATGC CCCTGATGAC GCAGAACGGC
ACCTTCATCG TGAACGGGAC CGAGCGCGTC GTGGTGTCGC AGATGCACCG CTCGCCCGGC
GTGTTCTTCG ACCATGACCG CGGCAAGACC CATTCCTCGG GCAAGCTGCT GTTCGCCTGC
CGTATCATTC CCTATCGCGG CTCGTGGCTC GACTTCGAAT TCGACGCCAA GGACCTGGTC
TTCGCGCGCA TCGACCGCCG CCGGAAACTG CCGGTGACGA CGCTGCTCTA TGCGCTCGGC
ATGGACCAGG AGGGCATCAT GGATGCCTTC TACAACACCG TGGACTACAA GCTGCAGCGC
GCCGGCAAGG GGCAGGCCGC TGGCTGGGTC ACGAAGTTCT TCCCCGAGCG CGTGCGCGGC
ACCCGCCCGA GCTTCGACCT GGTGAACGCC GAGACCGGCG AGATCATCAC CAAGGCCGGC
GACAAGGTGA CGCCGCGCCT GGTCAAGCAG CTTGCCGAAA AGGGCGACAT CAACCTGCTG
CTGCCCTTCG AGAAGATCGT CGGCCGCTTT GTCGCGAAAG ACATCATCAA CGAGCAGACC
GGCCTGATCT ATGCCGAGGC CGGCGACGAG ATCACCGTCG AATACGACCG CGACGGCGAG
ATTTCGGGCG GGCTGCTGAA GGTGCTGCTG GACAACGGCA TCGAGGATAT CCCGGTCCTC
GACATCGACC ACGTCAATGT CGGCCCCTAT ATCCGCAACA CCATGGCGGC GGACAAGAAC
ATGAGCCGCG ACGGCGCGCT CATGGACATC TATCGCGTCA TGCGTCCGGG CGAGCCGCCG
ACCGTCGAGG CCGCCTCGGC CCTGTTCGAC AGCCTGTTCT TCGACAGCGA GCGCTACGAT
CTTTCGGCCG TGGGCCGCGT CAAGATGAAC ATGCGCCTTG ACCTGGATGC GCCGGATACC
CAGCGCACCC TGCGCAAGGA GGACATCATC GCCTGTATCC GCGGCCTCGT GGAACTGCGC
GACGGCAAGG GCGAGATCGA CGACATCGAC CACCTGGGCA ACCGCCGGGT GCGCTCGGTC
GGCGAACTGA TGGAGAACCA GTATCGCATC GGCCTGCTGC GCATGGAGCG GGCGATCCGC
GAGCGCATGT CGGGCGTCGA GATCGACACG GTGATGCCGC AGGACCTGAT CAACGCCAAG
CCGGCCGCGG CCGCGGTGCG CGAGTTCTTC GGCTCGTCGC AGCTGTCGCA GTTCATGGAC
CAGACCAACC CGCTGTCGGA AGTTACGGAC AAGCGTCGCC TTTCGGCGCT TGGCCCGGGC
GGTCTGACCC GCGAGCGCGC CGGCTTCGAG GTGCGCGACG TTCATCCGAC CCATTACGGC
CGGATGTGCC CCATCGAGAC GCCGGAAGGC CAGAACATCG GCCTGATCAA CTCGCTGGCC
ACCTTTGCCC GCGTGAACAA ATACGGCTTC ATCGAGACCC CCTACCGCAA GGTGGTCGAG
GGCAAGGTCA CCGACGAGGT GGTCTACATG TCCGCGACCG AGGAGATGCG CCACACCATC
GCCCAGGCCA ACGCGACGCT GGACGAAAGC GGCAAGTTCG TGGACGAGCT GGTCTCGACC
CGCCAGGCCG GCGACTTCAT GCTGAACCCG GTCGAGGCCG TGGACCTGAT CGACGTGTCG
CCGAAGCAGC TGGTTTCGGT CGCCGCGGCG CTGATCCCCT TCCTTGAGAA CGACGACGCC
AACCGGGCGC TGATGGGCTC GAACATGCAG CGTCAGGCGG TTCCGCTGCT GCGTGCCGAG
GCGCCGTTCG TCGGCACCGG CATGGAAGCG ACCGTGGCGC GCGATTCCGG CGCCGCGATC
ATGGCACGCC GGGGCGGCAT CATCGACCAG GTCGATGCGC AGCGTATCGT TATCCGCGCG
ACCGAGGATC TGGGCGCCGG CGACGCGGGC GTGGACATCT ATCGCCTGCG CAAGTTCAAG
CGCTCCAACC AGTCCTCGAC CATCAACCAG CGCCCGCTGG TCAAGGTGGG CGACAAGGTG
GTCAAGGGCC AGGTCGTGGC CGACGGTCCC TCGACCGATC AGGGCGAACT GGCGATCGGC
CGCAACGTGG TCGTGGCCTT CATGCCCTGG AACGGCTACA ACTACGAGGA CTCGATCCTG
ATCTCGGAAC GGATCCACCG CGACGACGTG TTCACCTCGA TCCATATCGA TGAATACGAG
GTTGCGGCCC GCGACACCAA GCTGGGCCCG GAAGAGATCA CCCGCGACAT CCCGAACGTC
GGTGAGGAGG CGTTGCGCAA CCTCGACGAG GCCGGCATCG TCTATATCGG TGCGGAAGTG
GGCCCGGGCG ACATTCTGGT CGGCAAGATC ACCCCGAAAG GCGAAAGCCC GATGACGCCG
GAGGAGAAAC TGCTCCGCGC CATCTTCGGT GAAAAGGCGT CGGACGTGCG CGACACCTCG
CTGCGCCTGC CGCCGGGGGC CTACGGCACC ATCGTCGAGG TCCGGGTGTT CAACCGCCAC
GGCGTCGACA AGGACGAGCG CGCGCTGCAG ATCGAGCGCG AGGAAGTCGA GCGCCTGGCC
CGCGACCGCG ACGACGAGCT GGCGATCCTG GAGCGCAACA TCTATGCGCG CCTGAAATCG
CTGATCATGG GCAAGGAAGT CGTCAAGGGG CCGAAGGGCA TCCGCGCCGG CGCCGTCGTG
GACGAAGACC TGCTGGGTCA GTTGTCGCGC GGCCAGTGGT GGCAGCTTGC CGTCGCCGAC
GAGGATACCG CGAAAGAGGT CGAGGCGCTG AACCAGCAAT TCGACGCCCA GAAACGCGCC
TTGGACAACC GTTTCGACGA CAAGGTCGAG AAGGTGCGCC AGGGCGACGA CCTGCCTCCG
GGCGTGATGA AGATGGTCAA GGTCTTCGTC GCCGTGAAGC GCAAGCTGCA AGCGGGCGAC
AAGATGGCCG GTCGTCACGG CAACAAGGGC GTGGTGTCCA AGGTCGTCCC GATCGAGGAC
ATGCCGTTCC TTTCGGACGG CACCCCGGTC GACCTGGTGT TCAACCCGCT GGGCGTGCCC
TCGCGGATGA ACGTCGGGCA GATCCTCGAG ACCCATATGG GCTGGGCCTC GCGCGGGCTG
GGCATCAAGA TCGACGAGGC GCTGCAGGAC TATCGCCGCA ACGGCGACAT GACCCCGGTG
CGCGAGGCGA TGCAGAACGG CTATGGCGAC GATTTCTATG CCGAGACCTT CGAGGGCATG
GAAGACGAGA CCTTGCTGGA GCATGCCGAT GCCGTGCGCG GCGGCGTGCC GATTTCCACG
CCGGTCTTCG ACGGTGCGAA AGAGGCCGAT ATCAACGACG CGCTGCGCCG TGCGGGCTTC
GACACCTCGG GCCAGTCCAT CGTCTTCGAC GGCCGCACCG GCGAGCAGTT CGCCCGTCCG
GTCACCGTCG GGATGAAATA CGTCCTGAAG CTGCACCACC TTGTCGACGA CAAGATGCAC
GCCCGTTCGA CCGGCCCCTA CAGCCTGGTG ACCCAGCAGC CGCTGGGCGG CAAGGCGCAG
TTCGGCGGTC AGCGTCTGGG TGAGATGGAG GTCTGGGCGC TGGAAGCCTA TGGCGCCGCC
TACACCTTGC AAGAGATGCT GACGGTCAAG TCGGACGACG TGGCCGGCCG GACCAAGGTC
TATGAGAGCA TCGTCAAGGG CGAGGACAAT TTCGAGGCCG GCGTGCCGGA ATCGTTCAAC
GTCCTGGTCA AGGAGGTCCG GGGTCTGGGC CTCAACATGG AACTCCTGGA TGCGGAGGAC
GAGGAATAG
|
|---|
| Protein sequence | MAQAYVGQKR IRRYYGNIRE VLEMPNLIEV QKSSYDLFLR SGDAEGHQDG EGIQGVFQSV
FPIKDFNETA TLEFVKYELE KPKYDVEECQ SRDMTYAAPL KVTLRLIVFD VDETTGAKSV
KDIKEQDVYM GDMPLMTQNG TFIVNGTERV VVSQMHRSPG VFFDHDRGKT HSSGKLLFAC
RIIPYRGSWL DFEFDAKDLV FARIDRRRKL PVTTLLYALG MDQEGIMDAF YNTVDYKLQR
AGKGQAAGWV TKFFPERVRG TRPSFDLVNA ETGEIITKAG DKVTPRLVKQ LAEKGDINLL
LPFEKIVGRF VAKDIINEQT GLIYAEAGDE ITVEYDRDGE ISGGLLKVLL DNGIEDIPVL
DIDHVNVGPY IRNTMAADKN MSRDGALMDI YRVMRPGEPP TVEAASALFD SLFFDSERYD
LSAVGRVKMN MRLDLDAPDT QRTLRKEDII ACIRGLVELR DGKGEIDDID HLGNRRVRSV
GELMENQYRI GLLRMERAIR ERMSGVEIDT VMPQDLINAK PAAAAVREFF GSSQLSQFMD
QTNPLSEVTD KRRLSALGPG GLTRERAGFE VRDVHPTHYG RMCPIETPEG QNIGLINSLA
TFARVNKYGF IETPYRKVVE GKVTDEVVYM SATEEMRHTI AQANATLDES GKFVDELVST
RQAGDFMLNP VEAVDLIDVS PKQLVSVAAA LIPFLENDDA NRALMGSNMQ RQAVPLLRAE
APFVGTGMEA TVARDSGAAI MARRGGIIDQ VDAQRIVIRA TEDLGAGDAG VDIYRLRKFK
RSNQSSTINQ RPLVKVGDKV VKGQVVADGP STDQGELAIG RNVVVAFMPW NGYNYEDSIL
ISERIHRDDV FTSIHIDEYE VAARDTKLGP EEITRDIPNV GEEALRNLDE AGIVYIGAEV
GPGDILVGKI TPKGESPMTP EEKLLRAIFG EKASDVRDTS LRLPPGAYGT IVEVRVFNRH
GVDKDERALQ IEREEVERLA RDRDDELAIL ERNIYARLKS LIMGKEVVKG PKGIRAGAVV
DEDLLGQLSR GQWWQLAVAD EDTAKEVEAL NQQFDAQKRA LDNRFDDKVE KVRQGDDLPP
GVMKMVKVFV AVKRKLQAGD KMAGRHGNKG VVSKVVPIED MPFLSDGTPV DLVFNPLGVP
SRMNVGQILE THMGWASRGL GIKIDEALQD YRRNGDMTPV REAMQNGYGD DFYAETFEGM
EDETLLEHAD AVRGGVPIST PVFDGAKEAD INDALRRAGF DTSGQSIVFD GRTGEQFARP
VTVGMKYVLK LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRLGEME VWALEAYGAA
YTLQEMLTVK SDDVAGRTKV YESIVKGEDN FEAGVPESFN VLVKEVRGLG LNMELLDAED
EE
|
|---|
| |