| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0686 |
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| Symbol | tolB |
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| ID | 4578756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 667568 |
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| End bp | 668953 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639768004 |
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| Product | translocation protein TolB |
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| Protein accession | YP_914494 |
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| Protein GI | 119383438 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.223253 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.228867 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCATCTC TCCGTGCAAC GCTCTATCCT GCAACCAAGA CCTCCAGAGG GCGAAACATG
TTGCGTAAAT TCCTGCTGAC TTCCGTCATG GCCCTTGCCG GCTTTGGTCT TGCCGCGCCC
GTGCTGGCGC AGGACGGGCC GTTGCGGATC GAGATCACCG ATGGCGTGAT CGAGCCGATG
CCCTTTGCCA TCGCCCGCTT TCACGACGAG GGCGGGGCGG GCGAATACCT GGCGCAGGTG
CAGAACCTGA TTGCCGCCGA CCTGACCGGC ACCGGCCTTT TCCGCGAGAT CCCGGCCAGC
GCCCATATCG CGCGTCCCGA AAGCTTCGAG GCGCCCGTGT CCTACGAGGA CTGGAAGGCG
ATCAACGCGC AGGCGCTGAT CACCGGCTCG GTCAAGGTCC AGGGCGGCAA GGTCGTCGTC
AAGTTCCGCC TGTTCGACGT CTTTGCCGGC CAGCCGCTGG GCGACGGCAT GCAGTTCGAT
GCCTCGACCG GCAACTGGCG CCGCGCCGCG CACAAGGCCG CCGACCAGGT CTATTCGCGG
CTGACGGGCG AGGGTCCCTA TTTCGACAGC CGCGTCGCCT TCGTGCAGGA GACCGGCCCC
AAGGACGCGC GCCGCAAGCG CATCGGCATC ATGGATTACG ACGGCGCCAA CGTGAAATGG
CTGACCGACG ATTCGACGCT GGTCCTGAAG CCGCGCTTTT CGCCGGACGG CTCGCGGCTG
CTTTACACCA GCTATGCCAC GGGCTTCCCT CAGGCGATGA TGATGGACGT GAACTCGCTC
GCCGCCCGCC AGCTTGGCGC GGGCCAGCAG GGCACGATGA GCTTTTCGCC CCGCTTTTCG
CCGGACGGGC GCTGGATTGT CTATTCGCTG GAACAGAACG GCAATACCGA CATCTACCAG
ATGGACGCCG CCACCGGCGC GCAGCGGGCG CTGACCAACG CCCCCTCGAT CGAGACCTCG
CCCAGCTACA GCCCCGACGG CAAGCAGATC GTGTTCGAGA GCGACCGCTC GGGCACGCCG
CAGCTTTACG TCATGGGCGC GAACGGGGGC GAACCCCGGC GGATCAGCTT TGGCGAGGGG
CGCTATGGCA CCCCGGTCTG GTCGCCGCGC GGCGACATGA TCGCCTTTAC CCGGCAGGTC
GGCGGCAAGT TCCACATCGG CGTGATGCGC ACCGACGGTT CGGAAGAAAA AATGCTGACG
GAATCGTTCC TTGACGAGGG ACCGACTTGG GCCCCCAATG GGCGCGTCGT GATGTTCACG
CGGGTGACAC CGGGCGGCGA CGGCCAGCCG CGCCTGCATT CGGTGGATAT CACGGGGCGC
AATATGCGTC CGGTCAAGAT CAACGGCGCA GCTTCGGACC CCGATTGGGG GCCGCTGCTG
CCCTGA
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| Protein sequence | MASLRATLYP ATKTSRGRNM LRKFLLTSVM ALAGFGLAAP VLAQDGPLRI EITDGVIEPM
PFAIARFHDE GGAGEYLAQV QNLIAADLTG TGLFREIPAS AHIARPESFE APVSYEDWKA
INAQALITGS VKVQGGKVVV KFRLFDVFAG QPLGDGMQFD ASTGNWRRAA HKAADQVYSR
LTGEGPYFDS RVAFVQETGP KDARRKRIGI MDYDGANVKW LTDDSTLVLK PRFSPDGSRL
LYTSYATGFP QAMMMDVNSL AARQLGAGQQ GTMSFSPRFS PDGRWIVYSL EQNGNTDIYQ
MDAATGAQRA LTNAPSIETS PSYSPDGKQI VFESDRSGTP QLYVMGANGG EPRRISFGEG
RYGTPVWSPR GDMIAFTRQV GGKFHIGVMR TDGSEEKMLT ESFLDEGPTW APNGRVVMFT
RVTPGGDGQP RLHSVDITGR NMRPVKINGA ASDPDWGPLL P
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