| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0637 |
|---|
| Symbol | |
|---|
| ID | 4580248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 612897 |
|---|
| End bp | 614948 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639767955 |
|---|
| Product | penicillin-binding protein 1C |
|---|
| Protein accession | YP_914445 |
|---|
| Protein GI | 119383389 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.405443 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.682095 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGATCGC GCCGCTTCGC CCTGTCGCTG ATGGCTGCCG TTCTGGTCCT GGGCATCGGG
GCCGGGGCGC GGGATCGGTT CGACGATTGG GTCGATGCGA CGGCGCTGCC GCGGCTGGAG
GTGCCGGTGG GGGCCGAGGT CGTCGCGCGG GACGGCACCC TCTTGCGGGC GTTCCAGGTC
GCGGACGGGC GCTGGCGGCT GGATGCGGGG CCGGTCGATC CGCTGTTTCT CGACATGCTC
CTGCTGTGGG AGGACCGGCG GTTTCCGGGC CATTCCGGCA TCGATGCACG GGCGCTGCTG
CGCGCGGGCG TGCAGGCGCT GCGGCATGGC CGCGTGGTCT CGGGCGGCTC GACCCTGACC
ATGCAGGCCG CCCGGCTGAT CGAGGACGGG CCGACCGGGC AATGGGCCGG CAAGGGGCGG
CAGATGCGGT TGGCCCTGGC GCTGGAGCGG CGGCTGGGCA AGCGCGAGAT CATGGAGCTT
TACCTGCGCC TCGCCCCCTA TGGCGCCAAT GTCGAGGGCA TCCGCGCCGC CAGCCTGCAA
TGGTTCGGCA AGGAGCCGCG GCGGCTGACG CCGGCGCAGG CCGCGCTGCT GGTTGCGCTG
CCGCAATCGC CCGAGACGCG GCGGCCGGAT CGTTTCCCCG AGAGGGCCAC GGCCGCGCGC
GACCGGGTGC TGGCGCGGGC GGCGCGGGCC GGGCTGATTT CGGATGCCGA TGCGCGGGCG
GCGATGGCCG AGCCGGTGCC GCGCGTTCGC CGGGCCTTTC CGGCGCTGGC GCCGCTGCTG
GCCGCGCGGC TGGTGCGCGA GCATCCCGGC GCCTTGCGGA TCGAGACCAC CATCGATGCG
CGCCTGCAGC GCCGGGCCGA GGAACTGGCC TCGCGCGCCG TGCGCGGCGC CGGGCGGCGG
CTGTCGGCGG CGGTGGTGCT GGCAGATCAC CGCAACGGCG AGATCCTGGC CGAGGTCGGC
GCGGCGGACT GGACCGATGG CGCATCCGCC GGCTTCGTCG ACATGGCGCG GGCCTGGCGC
AGCCCCGGAT CGACGTTGAA GCCCTTTGTC TACGGGCTGG CCTTCGACGA CGGGCTGGCG
CATCCCGAGA CGCTGATCGA GGACCGGCCG ACCGTCTTCG GCCGCTGGCA GCCGCAGAAC
TTCGACCATC ATTTCCGCGG CACCGTCAGC CTGAAGAACG CGCTGATCTG GTCGCTGAAC
ATCCCGGTGG TGAAGCTGGC CGATGCCGTG GGGCCGAACC GCGTCACGCA GGCGCTGCGC
CGGGGCGGGG TGGAACTGCG CCTGCCCGGC GAGGTGCCGG GGCTGGCCGT CGTGCTGGGC
GGTGCGGGCG TGACGCTGGA GGGGCTGGCC GAGGGCTATG CGGCGCTGGC CCGCGGCGGG
CGGGGCATCA CGCTGTCGGC CCTGCCGGGT GGGGGCGAGG AGCGGCCGGC GCCGATGTTC
GGCCCGGTCG CCGCCTGGCA GGTCGGCAAT ATCCTCGGCC AGAACCCCGC CCCACAGGGC
GTTCGGCAAC GCGTGCTGGC CTACAAGACC GGCACCTCCT ACGGGCATCG GGACGCGCTG
GCGGTGGGGT TCGACGGCGC GCGGGTGGGC GCGGTCTGGC TGGGGCGGCC GGACGGGACG
CCTGTGCCCG GCGCCTTTGG CGGCGATCTG GCGGCGCCGG TGCTGTTCGA CCTGTTCGAC
GCGCTGCCCT CGGTTGCGCT GCCGCCGCCT CCGCCGCAGA CGCTCACGCT GCCCAACAGC
GCCCTGCCCC TGCCCTTGCG CCGCTTTGCC CCGGCGGGCA CGGCCAGCGC CATGGCGGCC
CGCCCCGCCG GCCCGGACGC GCTGCGCCTG ACCTATCCGC CCGACGGCGC CGAGATCGAC
GCACGGGGAC CGCTGACCGC CAAGGCGCGG GGCGGGCGCG GGCCATGGAC CTTTCTTCTG
AACGGCGCGC CCGCCGCCAT CGCCCAGCCG CAGCCCCTGG CCAGCCTGCC CAATCCCGGT
CCGGGCTTTG CCGAATTGAC GGTGGTGGAT GCGGATGGGG CCTCGGCGAC TGCGGCAATC
CGGCTGCACT GA
|
|---|
| Protein sequence | MRSRRFALSL MAAVLVLGIG AGARDRFDDW VDATALPRLE VPVGAEVVAR DGTLLRAFQV
ADGRWRLDAG PVDPLFLDML LLWEDRRFPG HSGIDARALL RAGVQALRHG RVVSGGSTLT
MQAARLIEDG PTGQWAGKGR QMRLALALER RLGKREIMEL YLRLAPYGAN VEGIRAASLQ
WFGKEPRRLT PAQAALLVAL PQSPETRRPD RFPERATAAR DRVLARAARA GLISDADARA
AMAEPVPRVR RAFPALAPLL AARLVREHPG ALRIETTIDA RLQRRAEELA SRAVRGAGRR
LSAAVVLADH RNGEILAEVG AADWTDGASA GFVDMARAWR SPGSTLKPFV YGLAFDDGLA
HPETLIEDRP TVFGRWQPQN FDHHFRGTVS LKNALIWSLN IPVVKLADAV GPNRVTQALR
RGGVELRLPG EVPGLAVVLG GAGVTLEGLA EGYAALARGG RGITLSALPG GGEERPAPMF
GPVAAWQVGN ILGQNPAPQG VRQRVLAYKT GTSYGHRDAL AVGFDGARVG AVWLGRPDGT
PVPGAFGGDL AAPVLFDLFD ALPSVALPPP PPQTLTLPNS ALPLPLRRFA PAGTASAMAA
RPAGPDALRL TYPPDGAEID ARGPLTAKAR GGRGPWTFLL NGAPAAIAQP QPLASLPNPG
PGFAELTVVD ADGASATAAI RLH
|
|---|
| |