| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0238 |
|---|
| Symbol | |
|---|
| ID | 4580818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 218785 |
|---|
| End bp | 219720 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639767553 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_914048 |
|---|
| Protein GI | 119382992 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.82352 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCT ATATCCTGAC ACGGCTGCTT GATGCCGTGC CGACCATGCT GCTGGTGCTG
ACGCTGGTCT TCCTGGCCAT GCGCGTCCTG CCCGGCGATC CGGCGCTGGC CGCGCTTGGC
GACGGCGCCC AGCCCGAGGC CATCGCGCAG TTTCGCGAAC GCTTTGGCCT GAACGATCCA
TTGTGGCTGC AATATCTGCA TTTCATGCGT GACATGCTGA CCTTCGATTT CGGCGCATCG
CTGATGTCGG GCGAACGGGT GGCGCAGCTG CTGGTCTCGA ATCTCGGCTA TACGGTCGAG
CTGACCATCG CGGCGGTTCT TCTGGGCATC ATGGGCGGCA TTCCCCTGGG CGTCATGGCG
GCGCTGAATC GCAACCGCGC GCCCGATGCG GGGTTTCGGG TGTTTTCCCT GCTGGGCTAT
GCGATCCCGG ATTTCTATCT GGGCGCGGTG CTGCTGATCG TCTTCTCGCT GTCGCTGGGT
TGGTTTCCCA TCAGCGGGGC CGGCGACGGT TTCGCCGACC GGATGCATCA CCTGGTCCTT
CCCGCGCTGA CGCTGGCACT CTTGAAGGTC GCCTTTCTCG GCCGCCTGAC CCGCACCGCG
CTGCTCGAAG TGCTGGGCCG CGACTTCGTG CGCACCGCCC GCGCGAAGGG CGCGCGGGAA
AACCGGGTGA TCTATCGCCA CGCGCTGCGC AATGCCCTGC TGCCGCTTTC GACCGGGCTG
GGCCTGTCGA TCCTGTCAAC GCTGTCGGGT TCGGTCGCGG TCGAGCTGGT GTTCAATCGC
CCCGGCCTGG GCAAGCTGCT GATCACCGCC ATCACCGAGC GCGACTATCC CATCGTCCAG
GCGGGCGTCG TGGTCTTCGC CGCCGCCGTC GTCGTCGTGA ACCTGTTGAT GGAACTGGTT
TACGTCATCA TCGACCCCAG GATCCGGGTG CAATAA
|
|---|
| Protein sequence | MTRYILTRLL DAVPTMLLVL TLVFLAMRVL PGDPALAALG DGAQPEAIAQ FRERFGLNDP
LWLQYLHFMR DMLTFDFGAS LMSGERVAQL LVSNLGYTVE LTIAAVLLGI MGGIPLGVMA
ALNRNRAPDA GFRVFSLLGY AIPDFYLGAV LLIVFSLSLG WFPISGAGDG FADRMHHLVL
PALTLALLKV AFLGRLTRTA LLEVLGRDFV RTARAKGARE NRVIYRHALR NALLPLSTGL
GLSILSTLSG SVAVELVFNR PGLGKLLITA ITERDYPIVQ AGVVVFAAAV VVVNLLMELV
YVIIDPRIRV Q
|
|---|
| |