Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_0010 |
Symbol | rph |
ID | 4578551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 9211 |
End bp | 9936 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639767321 |
Product | ribonuclease PH |
Protein accession | YP_913823 |
Protein GI | 119382767 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0689] RNase PH |
TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCGCC CCTCTGGCCG GAATTTAAGT GATATGCGCC CGATTTCAAT CGAAACGGGC ATCATGCGCC ATGCCGAGGG CTCTTGCCTG ATCTCTTGCG GCGACACCCG CGTGCTGTGT TCGGCCAGCA TCGAGGAGAA GGCGCCGCCC TTCCTGAAAG GGTCGGGCCA GGGCTGGGTG ACGGCAGAAT ATGGCATGCT GCCGCGCGCG ACCAACACCC GCAACCGGCG CGAGGCGGCG GCCGGCAAGC AATCCGGCCG CACCCAGGAA ATCCAGCGCC TGATCGGCCG TGCGCTGCGT GCCGGGGTGG ACCGCCGGGC CCTGGGCGAG CGGCAGATCG TCGTCGATTG CGACGTGATC CAGGCCGATG GCGGCACCCG CTGCGCCGCG ATCACCGGCG GCTGGGTGGC GCTGCGGCTG GCGATGAACA AGCTGCTCAA GGCCGGCATC GTCACCGCCG ATCCGATCAT GGACCATGTC GCTGCCGTGT CCTGCGGCAT CTATGCCGGG CAGCCGATCC TGGACCTGGA CTATGCCGAG GACAGCGAGG CCGGCACCGA CGGCAATTTC ATCATGACCG GGGCAGGGCG GCTGATCGAG GTGCAGATGT CGGCCGAGGG TGCCACCTTC TCGCGTCCCG AGATGAACCA GTTGCTCGAT CTGGCCGAAG CCGGCATCGC CGAACTGGTC CGCGCCCAGA ACGAGGCCGT GGCATGCGCA GGCTGA
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Protein sequence | MMRPSGRNLS DMRPISIETG IMRHAEGSCL ISCGDTRVLC SASIEEKAPP FLKGSGQGWV TAEYGMLPRA TNTRNRREAA AGKQSGRTQE IQRLIGRALR AGVDRRALGE RQIVVDCDVI QADGGTRCAA ITGGWVALRL AMNKLLKAGI VTADPIMDHV AAVSCGIYAG QPILDLDYAE DSEAGTDGNF IMTGAGRLIE VQMSAEGATF SRPEMNQLLD LAEAGIAELV RAQNEAVACA G
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