| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0003 |
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| Symbol | |
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| ID | 4579421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 2030 |
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| End bp | 3289 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639767314 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_913816 |
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| Protein GI | 119382760 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.398511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.940122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATACGA TCTTTGCCGA GGCGACCCCG CCCGGTCGAG GGGGCGTTTC CGTTGTCCGC
CTCAGCGGAC CGAAGGCGCA TGCGACACTG GAATCCCTGG CTGGACCAGT TGCAACGCCC
CGGATGGCGG CGTTGCGGGC GTTGCGGGAT GGCGACGACC TGATCGACCG CGCGCTGGTG
ATATGGTTTG CGGAAGGTCA CAGCTTTACC GGCGAGGAAG TGGCCGAACT GCATCTGCAT
GGCGCGCCCG TCATCGCCAG CCGACTGTCG CAGGCGTTGC TGGCAAGGGG ATTGCGGCGC
GCCGAAGCAG GCGAATTTAC CAAGCGCGCC TTCCTCAACG GTCGCATCGA TCTGGCCGAA
GCCGAAGGTC TGGCTGACCT GCTTTCAGCC GAGACCGAGG CACAGCGCAA GCTTGCCATG
CGAGCGACGG AAGGCGAGTT GGGACGCAAA GCCGACGAGC TGCGGTCCAA ACTGATCCGC
GCCGGCGCAT TGATCGAGGC CAGCATCGAT TTTGCCGATG AGGAAGTGCC CGATGAGGTT
CCTGAAGAGG CGTTGGACCT GATAAAAGCG GTCCGCAGCG ATATCCAGGG GATGTTGGCA
AGCTATCCGG CCACCGAACG GCTGCGCCAG GGCTATGAAG TGGCCATCAT TGGACCGCCG
AATGCCGGGA AATCGACTTT GCTGAACCGG ATCGGCCAAA GGGAAATCGC GCTGGTTTCA
GAGATTGCGG GGACCACGCG GGATATCCTT GAATTGCATA CGGATTTGCG TGGCTTGCCG
GTAACCTTCC TGGATACGGC CGGTCTGCGC GAGAGCAGTG ATCCGGTAGA GGCGATGGGG
GTTGCACGAG CTGTGCAACG GGCTGCGGAA GCGGATCTGC GCATCCATTT GTCGGTCGAT
GGCGTTCCTG AAGAAACCTT GGTGCTGGGC GATATTATCG TCCGTTCCAA GGCGGATCTG
GGCCGGGGCG AGGAAACTGC CATTTCCGGC CTGACCGGGG AAGGGGTCGC GGAGCTTCTG
GATTTGGTCT ATGATCGCCT GCGAGTCAGG GCTGCCGATT CAGGGTTGGT TGGGCACAAG
CGGCAGGCAG AGGCCTTGCA GCGCGCGGTG GCGGCTTTGG CGATTGACGA CAGCTTGGCA
CCGGAGTTTC TGGCAGAAGC CTTGCGGCAG GCAGCGCAAG CGTTGGCGAT GATGGTTGGG
CGGGTCGGGG CTGAGGATTA TCTGGACGAG ATCTTCAGTT CCTTCTGTAT CGGAAAGTAA
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| Protein sequence | MDTIFAEATP PGRGGVSVVR LSGPKAHATL ESLAGPVATP RMAALRALRD GDDLIDRALV
IWFAEGHSFT GEEVAELHLH GAPVIASRLS QALLARGLRR AEAGEFTKRA FLNGRIDLAE
AEGLADLLSA ETEAQRKLAM RATEGELGRK ADELRSKLIR AGALIEASID FADEEVPDEV
PEEALDLIKA VRSDIQGMLA SYPATERLRQ GYEVAIIGPP NAGKSTLLNR IGQREIALVS
EIAGTTRDIL ELHTDLRGLP VTFLDTAGLR ESSDPVEAMG VARAVQRAAE ADLRIHLSVD
GVPEETLVLG DIIVRSKADL GRGEETAISG LTGEGVAELL DLVYDRLRVR AADSGLVGHK
RQAEALQRAV AALAIDDSLA PEFLAEALRQ AAQALAMMVG RVGAEDYLDE IFSSFCIGK
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