| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_2529 |
|---|
| Symbol | |
|---|
| ID | 4569694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | + |
|---|
| Start bp | 2893871 |
|---|
| End bp | 2894602 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 639767089 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_912941 |
|---|
| Protein GI | 119358297 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAC CAATCCGTTT TCTTTTTCTT TTACTTTGCC TGATGTTGTT CGCAGAGAGT
CCGGTTTATG CGAAAAGTTT TAAAAGTATA ATGCTGCAAG CTGAAGAACA GCTTGACAAA
GGTGATTATA AAAGCGCTAT AACATTCTTT ACAAAGGCAA TAGAGCTTGA TCCCCAATCT
ATCGAAGCAT ACAACAGCCG AGGATCTGCA AAAGCCAAAT CAGGCGATTA TCCTGATGCC
ATTGAGGACT TCAGCATCGC AATTGAACTT GATCCGAATG CTGCAGAAGC ATACTACAAC
CGAGCTGCCG CAAAAGCATC CATCGAAGAT CACAAGGGAG CCAGAGAGGA CAGAAAAATG
GCCATGAAAC TCGACCCGAA ATTATCTTTG GTTTATGACA ACAGAGGTCT TATAAAATAT
CTCAGGGATA ATTACCAGGG AGCGATTGAT AACTTTACCA CGGCTCTTGA GCTTGACCCG
AAATCAGCCA TCGCATACAA ACACCGTGGA TATGCAAAAC ATGAGATGAA AGATTACCAG
GGAGCAATAG AGGATTACAC CTCTGCCCTT ACTTTTGATG CCAAACTTGC CGATGTCTAT
TGGAATCGCG CTCTGGCAAA GAGCCAGGTT GAGGATAATG AGGGAGCAAT AAAGGATTAT
AAAAAAGCGG CTAAACTTGG AAATATCAGC GCTCAAAACT GGCTGAAAGA AAATCTCGGT
GAGGAGGAAT AG
|
|---|
| Protein sequence | MNKPIRFLFL LLCLMLFAES PVYAKSFKSI MLQAEEQLDK GDYKSAITFF TKAIELDPQS
IEAYNSRGSA KAKSGDYPDA IEDFSIAIEL DPNAAEAYYN RAAAKASIED HKGAREDRKM
AMKLDPKLSL VYDNRGLIKY LRDNYQGAID NFTTALELDP KSAIAYKHRG YAKHEMKDYQ
GAIEDYTSAL TFDAKLADVY WNRALAKSQV EDNEGAIKDY KKAAKLGNIS AQNWLKENLG
EEE
|
|---|
| |