| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_1738 |
|---|
| Symbol | |
|---|
| ID | 4571100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides DSM 266 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008639 |
|---|
| Strand | + |
|---|
| Start bp | 1963607 |
|---|
| End bp | 1964539 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639766321 |
|---|
| Product | squalene/phytoene synthase |
|---|
| Protein accession | YP_912179 |
|---|
| Protein GI | 119357535 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.214205 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTACA GCTACAACGG ACAAACCTCC GTGCAGAACG CAGAGAGGCC TACAACTCTT
CAGAACTCAT ATAATTACTG TCGCCAGATT TCGAAACATC ACGCCAAAAC CTTTTATCTG
GCAAGTCTTT TTCTTCCCAA AAAACAGCAG AATCCTATTT TCGCCATGTA TGCCCTGCTG
CGAACGGTGG ATGATCTTGT TGACCTTGCC GAAGACAAAC TGACCAACGG GCAGATAACC
CGTGATGAAA TCAATCGATT GCTTGAAGAG TGGAAAATCC GGCTGAGAAA CTGTTATGCC
GGCCAGCCGA GCGACGATCC GATCATGACA GCGTGGCACG ACACCATACA ACACTATTCC
ATACCGCTTG AACTTCCGCT CGACCTTATT GACGGCGTGG CCATGGACAT CGAATTCAAG
CCATTTGAAA CGTTTGACGA TCTCTATGTC TATTGCTACA AGGTCGCATC GGTTGTCGGA
CTCATGACAT CGGAAATTTT CGGTTACACC AATAAAGATG CACTGCAGCA TGCTATTGAA
CTGGGCATCG CCATGCAATT GACCAATATC CTCAGGGATA TCGGCGAAGA TGTCGACAGG
AACAGAATTT ATCTGCCTCT TGAAGATCTC CGGAAGTTCA ATTACACCGA AAAGGAGTTC
ATGCAGAAAA AAATAAATGC CAACTTTCTT GAACTCATGA AATTCCAGAT TAACAGAGCA
CGACACTACT ATCGATCCTC TGAAAAAGGA ATTCCCATGC TTGAAAAAAA CAGCCGTTTT
GCAGTCATGA TCAGCAGTCT GAACTACAGC AACATTCTCA ATGCCATCGA AGAGAACAAC
TATGACGTTT TTTCACAACG GGCTTACCGG TCGTTTTATC AGAAAATCAG TACCATTCCC
TATGTCTGGT ACAAAACCAT GATAACCGGC TGA
|
|---|
| Protein sequence | MNYSYNGQTS VQNAERPTTL QNSYNYCRQI SKHHAKTFYL ASLFLPKKQQ NPIFAMYALL
RTVDDLVDLA EDKLTNGQIT RDEINRLLEE WKIRLRNCYA GQPSDDPIMT AWHDTIQHYS
IPLELPLDLI DGVAMDIEFK PFETFDDLYV YCYKVASVVG LMTSEIFGYT NKDALQHAIE
LGIAMQLTNI LRDIGEDVDR NRIYLPLEDL RKFNYTEKEF MQKKINANFL ELMKFQINRA
RHYYRSSEKG IPMLEKNSRF AVMISSLNYS NILNAIEENN YDVFSQRAYR SFYQKISTIP
YVWYKTMITG
|
|---|
| |