Gene Cpha266_0033 details

Gene Information

• Locus tag: Cpha266_0033
• Symbol: secD
• ID: 4568921
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium phaeobacteroides DSM 266
• Kingdom: Bacteria
• Replicon accession: NC_008639
• Strand: +
• Start bp: 32395
• End bp: 34254
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 639764634
• Product: preprotein translocase subunit SecD
• Protein accession: YP_910527
• Protein GI: 119355883
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAATA AACAGTTCCC TCTTTTTCTT CTGCTTGCGG TTACGGCGAT CTCTCTCTGG 
TCTTTATGGC CTACCTGGCG TGATTACTCC CTGACAAAAC AGATTGAGCG CTTTTCATCC 
AGCGAAGACA GCCTGAAGTT CAGCCTTGCG CATAGGGATG AAATTGAAAA TGCCCGCCGT 
AAAAGCCTGA AACTCGGTCT CGATCTGAAA GGAGGCATGC ACCTTGTCAT GGAGGTCGAT 
CAGATCGATC TTTTTATGCA GAAAGCCTGG AACAAGGACG CCAGGTTTTT TGAGCTGATG 
GATAAGGTGA AACAAAAATC GGTGACAAGC GATGCACGGG TCATTGATTT GATTGTGAAT 
GAGTTCACAA AAGAGAACAT TCGGCTGAGT CGATATTTTT ACGATATACG TAACTCTGAT 
AAAGAGATCG TCGGGAAACT GGAAAAAGAG TCGGAGGACG CCCTTCTCCG TGCCAAAGAG 
ATTATCAGAA ACCGTATCGA CCAGTATGGT GTCGCAGAGC CGGTGATAAC CACTCAGGGA 
AGCAGGAGAA TTATTATCGA ACTTGCGGGC GTTTCCGATG AGAACCGGGT GAGAAATCTT 
CTTAAAGGTA CGGCAAAACT CGAGTTCAAG CTTCTTCGCG ATCCCGATAT GCTTCTCAGG 
GCCCTTGACA GAGTGAACAG CGCGCTTGTG CAAGCCAGCG TCCAGAAACC AGTCGTTCCG 
GATTCCCTTG CCGTAAAGGA CTCGGCGGCA ACGGCCTCTC CTGCGGTTGC TCCGCCTCTC 
GATGCCACAG CGTCAAAACA GGCAAAAACG GCCGGCCCTC TTTATGACGT TATCGGCGTT 
TTACCTAATG GTACCGTTTT TACTCCCGAA CAGTCAAGAG AGTTCGTTTT GACGTTGTTG 
CAACGTGCTG ATGTTCAGGC GCTCCTGCCG CAAGACAGCG AGCTGCTTCT TTCGGCTAAA 
CCGGAGGTGG GAGAGAAAGG CGAGAAGTAC TATCCGATCT ATCTGGTAAA GAAAACTGCC 
GAACTGACCG GGGGCGTTAT CACGGAAGCC AAGGCGACGT TTGGATCCGA AGGGGTGCAG 
CCAGAGGTCA TGATGTCAAT GAATTCTGAT GGTACAGGCA AATGGGCTCG TATTACCGGT 
GCAAATATCG GAAAACGAAT TGCCATCGTG CTCGATGGCG CCGTTTACAG CGCTCCGGTT 
GTTCAGTCGA AGATTCCTAA CGGCAATTCG GTGATCAACG GAATTGAGAG TCTTGAAGAG 
GCGAAGGATC TGGAAATTGT TCTTAAGGCG GGAGCTCTGC CCGCACCGGT TAGAATTATG 
GAAGAACGGA CGGTTGGCCC CTCCCTTGGT GCCGACTATA TACGGGCGGG GATGCTCTCT 
CTCCTGTGGG GATTCTGCGC AGTGTCAATC TTCATGCTGG TGTACTACAG GAAGGCCGGC 
ATTGCCGCAG ATATAGCGCT GCTGCTGAAT ATTCTTATCG TGCTCTCTGT GCTTGCGGGG 
TTCAATGCCT CCCTCTCATT GCCGGGTATT GCGGGAATTG TGCTCACGAT GGGTATGGCT 
GTTGACGCCA ACGTTCTGAT TTATGAGCGA ATCCGGGAGG AGCTCGATGA GGGCAAGCCA 
CTCAAATCGG CGATAACGCT CGGTTATGAC CGGGCCTTTT CGTCGATTCT TGATTCGCAT 
GTCACCACCC TTTCAGCGGC ATTTCTTCTT TACACCTATG GTATTGGGCC TATTCAGGGT 
TTTGCGCTGA CGCTGATGAT CGGTACGGCG GCCAGTCTCT TTACCGCAAT TGTTGTTACC 
AGGGAGATAT TCACTATCCT GCTCGGCAGG AACATGATGA CGGAAAAAAG TTTCGGTTAA 

 

Protein sequence

MKNKQFPLFL LLAVTAISLW SLWPTWRDYS LTKQIERFSS SEDSLKFSLA HRDEIENARR 
KSLKLGLDLK GGMHLVMEVD QIDLFMQKAW NKDARFFELM DKVKQKSVTS DARVIDLIVN 
EFTKENIRLS RYFYDIRNSD KEIVGKLEKE SEDALLRAKE IIRNRIDQYG VAEPVITTQG 
SRRIIIELAG VSDENRVRNL LKGTAKLEFK LLRDPDMLLR ALDRVNSALV QASVQKPVVP 
DSLAVKDSAA TASPAVAPPL DATASKQAKT AGPLYDVIGV LPNGTVFTPE QSREFVLTLL 
QRADVQALLP QDSELLLSAK PEVGEKGEKY YPIYLVKKTA ELTGGVITEA KATFGSEGVQ 
PEVMMSMNSD GTGKWARITG ANIGKRIAIV LDGAVYSAPV VQSKIPNGNS VINGIESLEE 
AKDLEIVLKA GALPAPVRIM EERTVGPSLG ADYIRAGMLS LLWGFCAVSI FMLVYYRKAG 
IAADIALLLN ILIVLSVLAG FNASLSLPGI AGIVLTMGMA VDANVLIYER IREELDEGKP 
LKSAITLGYD RAFSSILDSH VTTLSAAFLL YTYGIGPIQG FALTLMIGTA ASLFTAIVVT 
REIFTILLGR NMMTEKSFG