Gene Cpha266_0033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpha266_0033 
SymbolsecD 
ID4568921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides DSM 266 
KingdomBacteria 
Replicon accessionNC_008639 
Strand
Start bp32395 
End bp34254 
Gene Length1860 bp 
Protein Length619 aa 
Translation table11 
GC content51% 
IMG OID639764634 
Productpreprotein translocase subunit SecD 
Protein accessionYP_910527 
Protein GI119355883 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR01129] protein-export membrane protein SecD
[TIGR00916] protein-export membrane protein, SecD/SecF family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATA AACAGTTCCC TCTTTTTCTT CTGCTTGCGG TTACGGCGAT CTCTCTCTGG 
TCTTTATGGC CTACCTGGCG TGATTACTCC CTGACAAAAC AGATTGAGCG CTTTTCATCC
AGCGAAGACA GCCTGAAGTT CAGCCTTGCG CATAGGGATG AAATTGAAAA TGCCCGCCGT
AAAAGCCTGA AACTCGGTCT CGATCTGAAA GGAGGCATGC ACCTTGTCAT GGAGGTCGAT
CAGATCGATC TTTTTATGCA GAAAGCCTGG AACAAGGACG CCAGGTTTTT TGAGCTGATG
GATAAGGTGA AACAAAAATC GGTGACAAGC GATGCACGGG TCATTGATTT GATTGTGAAT
GAGTTCACAA AAGAGAACAT TCGGCTGAGT CGATATTTTT ACGATATACG TAACTCTGAT
AAAGAGATCG TCGGGAAACT GGAAAAAGAG TCGGAGGACG CCCTTCTCCG TGCCAAAGAG
ATTATCAGAA ACCGTATCGA CCAGTATGGT GTCGCAGAGC CGGTGATAAC CACTCAGGGA
AGCAGGAGAA TTATTATCGA ACTTGCGGGC GTTTCCGATG AGAACCGGGT GAGAAATCTT
CTTAAAGGTA CGGCAAAACT CGAGTTCAAG CTTCTTCGCG ATCCCGATAT GCTTCTCAGG
GCCCTTGACA GAGTGAACAG CGCGCTTGTG CAAGCCAGCG TCCAGAAACC AGTCGTTCCG
GATTCCCTTG CCGTAAAGGA CTCGGCGGCA ACGGCCTCTC CTGCGGTTGC TCCGCCTCTC
GATGCCACAG CGTCAAAACA GGCAAAAACG GCCGGCCCTC TTTATGACGT TATCGGCGTT
TTACCTAATG GTACCGTTTT TACTCCCGAA CAGTCAAGAG AGTTCGTTTT GACGTTGTTG
CAACGTGCTG ATGTTCAGGC GCTCCTGCCG CAAGACAGCG AGCTGCTTCT TTCGGCTAAA
CCGGAGGTGG GAGAGAAAGG CGAGAAGTAC TATCCGATCT ATCTGGTAAA GAAAACTGCC
GAACTGACCG GGGGCGTTAT CACGGAAGCC AAGGCGACGT TTGGATCCGA AGGGGTGCAG
CCAGAGGTCA TGATGTCAAT GAATTCTGAT GGTACAGGCA AATGGGCTCG TATTACCGGT
GCAAATATCG GAAAACGAAT TGCCATCGTG CTCGATGGCG CCGTTTACAG CGCTCCGGTT
GTTCAGTCGA AGATTCCTAA CGGCAATTCG GTGATCAACG GAATTGAGAG TCTTGAAGAG
GCGAAGGATC TGGAAATTGT TCTTAAGGCG GGAGCTCTGC CCGCACCGGT TAGAATTATG
GAAGAACGGA CGGTTGGCCC CTCCCTTGGT GCCGACTATA TACGGGCGGG GATGCTCTCT
CTCCTGTGGG GATTCTGCGC AGTGTCAATC TTCATGCTGG TGTACTACAG GAAGGCCGGC
ATTGCCGCAG ATATAGCGCT GCTGCTGAAT ATTCTTATCG TGCTCTCTGT GCTTGCGGGG
TTCAATGCCT CCCTCTCATT GCCGGGTATT GCGGGAATTG TGCTCACGAT GGGTATGGCT
GTTGACGCCA ACGTTCTGAT TTATGAGCGA ATCCGGGAGG AGCTCGATGA GGGCAAGCCA
CTCAAATCGG CGATAACGCT CGGTTATGAC CGGGCCTTTT CGTCGATTCT TGATTCGCAT
GTCACCACCC TTTCAGCGGC ATTTCTTCTT TACACCTATG GTATTGGGCC TATTCAGGGT
TTTGCGCTGA CGCTGATGAT CGGTACGGCG GCCAGTCTCT TTACCGCAAT TGTTGTTACC
AGGGAGATAT TCACTATCCT GCTCGGCAGG AACATGATGA CGGAAAAAAG TTTCGGTTAA
 
Protein sequence
MKNKQFPLFL LLAVTAISLW SLWPTWRDYS LTKQIERFSS SEDSLKFSLA HRDEIENARR 
KSLKLGLDLK GGMHLVMEVD QIDLFMQKAW NKDARFFELM DKVKQKSVTS DARVIDLIVN
EFTKENIRLS RYFYDIRNSD KEIVGKLEKE SEDALLRAKE IIRNRIDQYG VAEPVITTQG
SRRIIIELAG VSDENRVRNL LKGTAKLEFK LLRDPDMLLR ALDRVNSALV QASVQKPVVP
DSLAVKDSAA TASPAVAPPL DATASKQAKT AGPLYDVIGV LPNGTVFTPE QSREFVLTLL
QRADVQALLP QDSELLLSAK PEVGEKGEKY YPIYLVKKTA ELTGGVITEA KATFGSEGVQ
PEVMMSMNSD GTGKWARITG ANIGKRIAIV LDGAVYSAPV VQSKIPNGNS VINGIESLEE
AKDLEIVLKA GALPAPVRIM EERTVGPSLG ADYIRAGMLS LLWGFCAVSI FMLVYYRKAG
IAADIALLLN ILIVLSVLAG FNASLSLPGI AGIVLTMGMA VDANVLIYER IREELDEGKP
LKSAITLGYD RAFSSILDSH VTTLSAAFLL YTYGIGPIQG FALTLMIGTA ASLFTAIVVT
REIFTILLGR NMMTEKSFG