| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3402 |
|---|
| Symbol | |
|---|
| ID | 4572327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 3753517 |
|---|
| End bp | 3754683 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639757461 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_903052 |
|---|
| Protein GI | 118581802 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCAAT CCGAACAAAC TTCTGTCGTT ATGGATGAAT CGGCCAATCC CCAGATTCAC
GGTCTACTGG ATTACCTTGA GATTCTCGCC CGGCGCTGGA GGCTGATTAT CAGTGTGCCA
TTAGTAGCCT CTGTCATCAC TGCTGTCATC AGCCTCTTCA TGCCCAACAT CTACACCGCT
ACAACCATGA TTATCCCAAC CGATGAGGCC ATAATGGCGC AACTCGGAGG ACTGGCAGCC
ATGGTCGGTG GGGCTCTTGG AGGAAAAACC AATGGTGAAT TATATGTCAC CATGCTCAAG
AGCGAGGCCA TTAAAGACCC GGTTATCGAC AAATTCAATC TGATGAACCG GTTCAAGCTA
AAGTTCCGAG CCGATGCCTA TAAGGTGCTC GACAACAAGG TTGATGTTTC GTTGGGCAAA
ATGGATGGGG TGCTTACTAT ACAGGTTAAC GACAAAAGCC CAAAGATGGC TGCTGATCTA
GCTAATGCAT ACGTAAGTGA GCTCGGCAAA CTTGCTGCTG GTATACAGAC AAGAAAAGCA
AGTGACAATA AGCTGTTTTT TCAAAAGCAG ATAGAATATA CAAAGTCAAA TCTTAACAAA
TCTGAAGAAG CATTGAAGGA GTTTCAAAGC AAAAACAAAT CATTTTCTGT ATCAGATCAA
GCTAAAGCAT CTATCGAAAA TGTAGCCCAG CTTCGAGCAC AACTGGCAAT CAGGGAAGTC
GAGCTTGGTA CGTTGCAACG GCAATTTACC GACAACAGTC AGGAGGTAAA GAGCGCCAAA
GCCGCTGTTG CTCAACTGCG TGGACAAATA ACAGGACTTG AAGGCAAAAA CGGCTCCAGC
AGTTCAATCC CCCAACTGGG CAAGGTCCCT CAACTGGGAC AGGAATATTT ACGCCTGATG
CGTGAGTTTA AGATTCAAGA GGCTATGCTG GAGATGCTGG TAAAACAGCA CGAGATTGCA
GGGTTATCAG AAAATAAGGA CATGTCGCCA TTTGGCGTGC TGCAAAAAGC TAACGTACCT
GACAAAAAAA CAAAACCGAT TCGCCGCAAC ATGGTGCTAA AGGCATTCTT TGTATCATTT
TTTACTTGCT CGTTTTTTGT ACTCTATTCA GACAGACTTC GACACATCTA TTCACAGATT
CGAAATAGAG TTTTCAAAAC AGAATGA
|
|---|
| Protein sequence | MHQSEQTSVV MDESANPQIH GLLDYLEILA RRWRLIISVP LVASVITAVI SLFMPNIYTA
TTMIIPTDEA IMAQLGGLAA MVGGALGGKT NGELYVTMLK SEAIKDPVID KFNLMNRFKL
KFRADAYKVL DNKVDVSLGK MDGVLTIQVN DKSPKMAADL ANAYVSELGK LAAGIQTRKA
SDNKLFFQKQ IEYTKSNLNK SEEALKEFQS KNKSFSVSDQ AKASIENVAQ LRAQLAIREV
ELGTLQRQFT DNSQEVKSAK AAVAQLRGQI TGLEGKNGSS SSIPQLGKVP QLGQEYLRLM
REFKIQEAML EMLVKQHEIA GLSENKDMSP FGVLQKANVP DKKTKPIRRN MVLKAFFVSF
FTCSFFVLYS DRLRHIYSQI RNRVFKTE
|
|---|
| |