| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3195 |
|---|
| Symbol | |
|---|
| ID | 4573262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 3510494 |
|---|
| End bp | 3512815 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639757254 |
|---|
| Product | 1A family penicillin-binding protein |
|---|
| Protein accession | YP_902846 |
|---|
| Protein GI | 118581596 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGAA GAGCGCCGTC ATCCGGCGGC GGGAAGGGCC TGCTCAAGGT GGTCCTGCTG
TGTGTCGCCA CCTTGGCCGT CATATCCGCC CTGGGGGCGG GCGGGTATCT GTTTTATCTG
CTTTCCCGCC TTCCCAGGGT CGACCGCCTG GCCGACTATA AACCGCCCAT CGTGTCACAG
GTGTTCGGCG ACGATGGCAG CCTGGTGGGT GAGTTCTATC TGGAACGGCG CATCGTAGTC
CCGGTGGACC GGATGCCGCG CAAGCTGATC CAGGCCTTTG TGGCCGCCGA AGATGCCAGC
TTCTATTCCC ACCGGGGGAT CGATTACTTC GGCATCCTGC GCGCCGCGTT CAAGAACGTC
CTCTCCATGC GTAAAAAGGA GGGCGCCTCC ACCATCACCC AGCAGGTGAC CAAGTCCATG
CTGCTGACCT CCGAGAAGAA GTTCTCCCGC AAGATCAAGG AAGCCATCCT GGCCAAGCGC
ATGGAGGAGA AGCTCACCAA GGACGAAATC CTCTATATTT ACCTCAATCA GATCTATATG
GGTGCGGGGG CCTATGGCGT GCAGGCCGCG GCCGAGACCT ATTTCGGAAA AGATGTTGAT
CATCTCAACC TGGCCGAGAT GGCCATGCTG GCCGGTCTGC CCAAGTCGCC CAACGCCTAT
TCGCCCATCA AGCATCTGGA AAAAGCCCGG GAACGCCAAG CCTACGTCCT GGACCGGATG
GTCAAAGAGG CCTACATCAC GCCAGCCGAG GCGGAACATG CCCGGAACAC CCCGCTCTCC
ATCCATCCCA TGAAGAAGGT CAACAATGAA CAGTCGGCCT ACTTCCTGGA ATACCTGCGT
ATCCAGCTGG AGGAACGCTA TGGCGAGGAC CAGCTCTACA AGGGGGGGCT GAAAATCTAC
ACCACCATGA ATGCTGCCAT GCAGCGTGCC GCCTACGAGA GCCTGCGGGC CGGCCTCAAG
GCGGTGGACA AACGCCAGGG GTTCCGCGGG CCGCAGAAGT ATCTCCAGGC GGACGAGGTG
GATGCTTTCT GCGCCAATGT GGAGGCGGGG ATCGATTCGG CCGTGCTCAA GACCGGCGAG
ACCTACCAGG GGGTGGTGGT GGGCGTGAAC CCGGCCAGGG GAGAGGCCAG GGTCAGGGTG
GGGGAACGCA CGGGGATTCT CAGTAGAAAG AACATGGCTT GGGCTGGCCG ACTGGCTCTG
GTCAACGGCT ATGACCAGCC CCGCAAGGGG CGTAAATCCC TCTGTCTCGG TTCGGTGATC
GATGTGGCGG TGGTTTCGCC GGAGATCGAC AAGCAGGGTG CCCAGTTCAG CCTGGACCAG
ACTCCCGATG TGCAGGCGGC CCTGGTGGCC ATTGATCCCC GCAGCGGCGG TATCAAGGCC
ATGGTCGGCG GCTATGACTT CAGGAAGAGC CAGTTCAACC GGGCCATGCA GTCCAGGCGT
AATGCCGGTT CGGCCTTCAA GCCGATCATC TACGCTGCCG CCCTGGACAA GGGCTTTACG
CCGGCCACGG TGATCGAGGA CGTGGAGGTT GAATATCCGG ACGGTTCCGG TGGCATCTGG
AAGCCGAAGA ACTACGATGG CACCTTCAGG GGGCCGGTAA CCATGCGCGA GGCCCTGACC
AATTCCATCA ACATCGTCAG CGTCAAGATC ATGGATCAGA TCGGCGCCTC CTATGCCGCC
GACTATGCCA GGAAGTTCGG TTTTACCAGC CCCATTTCCG CTAACCTGGC CCTGGCACTG
GGAGCAGCCT CGGTCTCTCC CCTGGAGTTG ACATCCGCCT ACGCTGTCTT TGCCAACAAG
GGGGTCTCCC TGCCCAGGTC GGTGATCACC AAGGTGACGG ACAATGACGG CGTGGTGCTC
CAGCAGCAGG ATTCGGTTCC GGTGGCGACT CCGATCCTGT CACCCGAGAA CGCCTACGTT
ATCACCAACC TGATGCAGAG CGTGGTGTCC AGCGGGACCG GGCACCGCGC GTCCATCGTC
GGCCGGCCGG TGGCCGGTAA AACCGGCACC ACCAATGACT CCAAGGATGC CTGGTTCGTC
GGCTATGTCC CCCAACTGGC GGCCGGGGTC TGGGTTGGCT ATGACCAGGA GCGCTCCCTG
GGGGCGGGAG GGTCGGGCGG TCAGGCAGCC GCCCCCATCT GGGCGGAATT CATGCAGAAG
GCGGTGTCCG AGTTGCCAGT GGAGGATTTT GAGGCTCCGG AGAATGTCAC CTTCGTGCTG
ATAAACCCGC GCACCGGCAG GCTTGCCCGG GAGGGAACGC CGGGCGCCAT CATGGAGTGC
TTCGTCAAGG GCGCCGAACC GTCCAGCTAT GACGGTGACT GA
|
|---|
| Protein sequence | MERRAPSSGG GKGLLKVVLL CVATLAVISA LGAGGYLFYL LSRLPRVDRL ADYKPPIVSQ
VFGDDGSLVG EFYLERRIVV PVDRMPRKLI QAFVAAEDAS FYSHRGIDYF GILRAAFKNV
LSMRKKEGAS TITQQVTKSM LLTSEKKFSR KIKEAILAKR MEEKLTKDEI LYIYLNQIYM
GAGAYGVQAA AETYFGKDVD HLNLAEMAML AGLPKSPNAY SPIKHLEKAR ERQAYVLDRM
VKEAYITPAE AEHARNTPLS IHPMKKVNNE QSAYFLEYLR IQLEERYGED QLYKGGLKIY
TTMNAAMQRA AYESLRAGLK AVDKRQGFRG PQKYLQADEV DAFCANVEAG IDSAVLKTGE
TYQGVVVGVN PARGEARVRV GERTGILSRK NMAWAGRLAL VNGYDQPRKG RKSLCLGSVI
DVAVVSPEID KQGAQFSLDQ TPDVQAALVA IDPRSGGIKA MVGGYDFRKS QFNRAMQSRR
NAGSAFKPII YAAALDKGFT PATVIEDVEV EYPDGSGGIW KPKNYDGTFR GPVTMREALT
NSINIVSVKI MDQIGASYAA DYARKFGFTS PISANLALAL GAASVSPLEL TSAYAVFANK
GVSLPRSVIT KVTDNDGVVL QQQDSVPVAT PILSPENAYV ITNLMQSVVS SGTGHRASIV
GRPVAGKTGT TNDSKDAWFV GYVPQLAAGV WVGYDQERSL GAGGSGGQAA APIWAEFMQK
AVSELPVEDF EAPENVTFVL INPRTGRLAR EGTPGAIMEC FVKGAEPSSY DGD
|
|---|
| |