| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_2912 |
|---|
| Symbol | |
|---|
| ID | 4574739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 3186569 |
|---|
| End bp | 3187597 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639756964 |
|---|
| Product | dihydrouridine synthase, DuS |
|---|
| Protein accession | YP_902567 |
|---|
| Protein GI | 118581317 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAT CCCCAACAAC AGACCGCGAC AACCCGACGC CACCACGTCT CCTGCCCGGG
CCAGCGCACC CCCCGACGCT CCCCTGGCGC CAGGGGCAGA CTCCGCTCAT GCTCGCTCCC
ATGCAGGGGG TGACCAACAG CGCCCTGCGC TCCCTGTTCA TCGACTGGGT CCGACCGGAT
GTGGTCTTCA CCGAATTCAT GCGCGTCAAC CCCGCTGCCG CACAGAGACG CCTCTCGGCG
GCCGACCTGG CCGAGGCGGG TTCAGCCGGA GATGATGTCC CCCTTGTGGT GCAACTGATC
GGCCATGGCA GGGAAGCGCT CGTTTCGGGC AGTCAGGCGG CCCAGGATGC CGGAGCAGCG
CACATCAACC TGAACATGGG CTGTCCCTAC GGCCGCATGA CCAGCGGCCA GACCGGCGGC
GGTATGCTGC GCTCCCCCCA GGAACTTTCA AGCATCATAC CTGCACTGCG CAAGACCATC
AGGGGAACTT TCTCCATCAA ACTGCGCTCC GGTTACGACA ACCCCCGTCA GATATTCGAC
CTGCTGCCGC TCTTCGAAGC ATCGGGAGTG GATTTCCTAG TTCTGCATCC CCGCACAGTA
CTGCAGAAGT ACGCTGGTTT CGCCGACCAC GGCATCACGG CCGAAGCGGT CCAAAGGAGC
ACCCTGCCGA TCATCGCCAA CGGGGATATC CGCAGCGTAG CAACGGGGCG GCATGTGCTG
CGGGAAACCG GCGCAGCCGG ACTGATGCTG GGGCGGGGCG CCATATCCGA CCCCCTGCTC
TTCCAGCGCC TGCGCAACTG CGCCCCTCCC GACCCGCAAC CACAGGAACG GGCGGCGATG
CTCTCCCGCT ATCTGGATGA GTTGCTGACC CGCTACCAGA CCCTGTTCTG CGGTGAAGCC
CAGATACTGG GTAAAATCAA GGAGATCGTA TCCACCATCC ATGAACCTGC CTTTGAAAAA
GGCTTCCATC GGCTAAAAAA GGCCCGCAGA ATCGAGGCCT TCAGGGAGCT TTTGGCGGAA
CTGGCCTGA
|
|---|
| Protein sequence | MTPSPTTDRD NPTPPRLLPG PAHPPTLPWR QGQTPLMLAP MQGVTNSALR SLFIDWVRPD
VVFTEFMRVN PAAAQRRLSA ADLAEAGSAG DDVPLVVQLI GHGREALVSG SQAAQDAGAA
HINLNMGCPY GRMTSGQTGG GMLRSPQELS SIIPALRKTI RGTFSIKLRS GYDNPRQIFD
LLPLFEASGV DFLVLHPRTV LQKYAGFADH GITAEAVQRS TLPIIANGDI RSVATGRHVL
RETGAAGLML GRGAISDPLL FQRLRNCAPP DPQPQERAAM LSRYLDELLT RYQTLFCGEA
QILGKIKEIV STIHEPAFEK GFHRLKKARR IEAFRELLAE LA
|
|---|
| |