| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_2420 |
|---|
| Symbol | |
|---|
| ID | 4572719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 2618218 |
|---|
| End bp | 2619939 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639756470 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_902083 |
|---|
| Protein GI | 118580833 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAT CCTATGGTCG CAGAAATATC GGCGCTATTC TCATGGAGCG CGGCTGTCTG
ACGGCGGAAC AGCTCCCCGT GGTGGTGGGG CAGCTGGAAT CCAGCCGGCA GCGCTTCGGC
GAGATCTGTA TCCGCGAGGG TTTCGTCGGC GAACAGGACC TGGCCCGGGC CCTGGCCGAG
CAGTTTGATC TGGAATACGT GGATCTGGCC GGCTTCAGGA TGAACGAGGA GCTGCTCAAC
AGCCTGCCCA CCGATGCCAT ATACCGCTTC CGTTTCGTAC CGCTGGCAAT GGAGTCCGGC
GTGCTCAGTG TGGCTGTCTC CGATCCCACC GACGTGGTCA AGCTGGATGA CCTGGAATTG
CTGCTGGGCT GTCCGCTGAG CATCTCCGTT GCCACGGAAA GCGCCGTCGC TTCGGTGATC
AAAACCGGTG AGGGCACCCG CCGCGTGCTG CGGGAAGTCT CGGAAGACTT CATGCTGCAA
CTGGTCAGGG AGACCGACCG TGGGGAAGAG GTCCTCACGG TGGAGAACAT CTCCGAAGAC
ATCAGCCCGA TCATCAAGCT GATCAACACC ACCCTGCTGG ACGCGCTCAA CCGCCGCGCC
AGCGATATCC ACATCGAAAC CGGCCATGAA GGGGTGGAGA TTAAGTACCG TATCGACGGC
GTTCTCTACC GGGCCAGCGA CCCCATCGAC CTGCACCTCC AGGCCCCGAT CATCTCGCGG
CTCAAGGTCA TGAGCGAACT GGATATTTCC GAACGCCGCA TCCCCCAGGA CGGCCGCTTC
AAGGTCCGTT TCGGCTCCAA GTCCATCGAC TTCCGCGTTT CCATCATGCC CAGCGCCCTG
GGGGAGGATG CCGTTATCCG CATCCTGGAC AAGGAGAGCA TCGCCAACGA CCTGAAGGGA
CTTTCCCTGG AAAACCTGGG CATCAGCGAA CGCGAGATCA GGCGTTTCAG GAAAAAGATC
CGCGAGCCCT ACGGCATGGT GCTGGTGACC GGGCCCACCG GTTCGGGCAA GACCACCACC
CTCTACGCCG CCCTGACCGA GATCCACACC GGCGAGGAGA AGATCATCAC CATCGAGGAT
CCGGTGGAAT ACATGCTGCG CGGGGTGCTG CAAATTCCGG TCAACGAGAA GAAGGGGCTG
ACCTTCGCCA AGGGGTTGCG CTCCATCCTG CGCCACGACC CGGACAAGAT CATGGTGGGC
GAGATCCGCG ACCCGGAAAC CGCCCAGATC GCCGTGCAGT CGGCCCTGAC CGGCCACCTG
GTCTTTACCA CCGTGCATGC CAACAACGTC TTCGACGTCA TCGGCCGTTT CATCCACATG
GGGATCGACC CCTATAACTT CGTCTCCTGC CTGAACTGCG TCATGGCACA GCGTCTGGTG
CGGCGCGTCT GTCCCTCCTG CCGCCGTCCG GTGACCTATG GCGACGAAGA GCTTCTGGCT
GCCGGCGTGG ATCCCCGGGT CGTGCGAGGG GTAACCCTCT ACGAGGCCCA TGGCTGCGAG
GACTGCAACG GCACCGGCTA CCGCGGTCGT TCGGCAATCG TGGAGCTGAT GGAGCTGAAC
GACCGCATAC GTGATCTGAT CATCGGCAAG GTTCCGGCAA CCCAGCTCAA GCAGGCGGCC
CGCGAGTGCG GGGTGGTATT CCTGCGCGAT TCGGCGGTGG AAAAGCTGAT CCAGGGGGAT
ACAACCCTGA AAGAGATCAA CCGTGTCACC TTCGTGGAGT AA
|
|---|
| Protein sequence | MTQSYGRRNI GAILMERGCL TAEQLPVVVG QLESSRQRFG EICIREGFVG EQDLARALAE
QFDLEYVDLA GFRMNEELLN SLPTDAIYRF RFVPLAMESG VLSVAVSDPT DVVKLDDLEL
LLGCPLSISV ATESAVASVI KTGEGTRRVL REVSEDFMLQ LVRETDRGEE VLTVENISED
ISPIIKLINT TLLDALNRRA SDIHIETGHE GVEIKYRIDG VLYRASDPID LHLQAPIISR
LKVMSELDIS ERRIPQDGRF KVRFGSKSID FRVSIMPSAL GEDAVIRILD KESIANDLKG
LSLENLGISE REIRRFRKKI REPYGMVLVT GPTGSGKTTT LYAALTEIHT GEEKIITIED
PVEYMLRGVL QIPVNEKKGL TFAKGLRSIL RHDPDKIMVG EIRDPETAQI AVQSALTGHL
VFTTVHANNV FDVIGRFIHM GIDPYNFVSC LNCVMAQRLV RRVCPSCRRP VTYGDEELLA
AGVDPRVVRG VTLYEAHGCE DCNGTGYRGR SAIVELMELN DRIRDLIIGK VPATQLKQAA
RECGVVFLRD SAVEKLIQGD TTLKEINRVT FVE
|
|---|
| |