Gene Ppro_2403 details

Gene Information

• Locus tag: Ppro_2403
• ID: 4572234
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter propionicus DSM 2379
• Kingdom: Bacteria
• Replicon accession: NC_008609
• Strand: -
• Start bp: 2600464
• End bp: 2602344
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 639756454
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_902067
• Protein GI: 118580817
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACTAC TGGACACAAT CGACTCCCCT GCCGACCTGA AAAGGCTTCC GGTTTCCCGG 
CTTCCCCAGG TGGCCGAAGA GCTGCGACGG GTGATCATCC AGACCTGCTC GACCAACGGC 
GGCCACCTGG CCCCCAGCCT GGGGGTGGTG GAACTGACCA TCGCCCTGCA CCGGGTCTTC 
TCCACCCCGG AGGACAAGAT CGTCTGGGAC GTGGGGCACC AGGCATACGC CCACAAGCTG 
CTCACCGGCC GTCGCGACCG CTTCTCCACC CTGCGCAAGC TGGACGGCAT CAGCGGCTTT 
CCCAAGCGTG ACGAATCGCC CCACGATGCC TTCGAGGTGG GGCATGCCTC CACCTCCATT 
TCGGCCGCCA CCGGCCTGGC TGCGGCCCGC GACCTGGCCG GGCGCAGGAA CAAGGTGCTG 
GCGGTGATCG GCGACGGCTC CATGACCGGC GGCATGGCCT ACGAGGCAAT GAACCATGCC 
GGCCACATGA ACCGGGACAT GATCGTGATC CTGAACGACA ACGAGATGTC CATCGCCGAG 
AACGTGGGCG CGCTCTCCAA TTTCCTGACC CGCACCGGTT CCAGCGAGTT CGTCTACCGC 
TTCAAGAAGA ACGTGGAGTC CTTCCTGGGC CGCAAGGACA CCGTGGGCAA GAATCTGCTG 
CACCTGGCCA AGAAGCTGGA GGACTCCTTC AAGGGATTCT TTACCCCGGG CATGCTCTTC 
GAGGCCTTCG GGTTCGAGTA CATCGGCCCC ATCGACGGCC ATGACCTGCC CATGCTGCTG 
GAGACCCTGG AGAAGGTCAA GAAGTACCAC GATGCCGTGC TGATCCATGT GTTGACCAAG 
AAGGGCAAGG GGTACAAGCC GGCCGAGGAC GATCCGTCAC TGTTTCACGG GGTCGGCCCC 
TTTGATCTGG AGAGCGGCAG GGTGCTCAAG GGGAAGGGGG GGGCGGCCTC CTACACCGCC 
ATCTTCGGCT CAGCACTCTG CAAGCTGGCT GCCGATGACG AACGGGTGGT GGCCATCACC 
GCCGCCATGC CCGATGGCAC CGGTCTGATC CCTTTTTCCC GGCAGTTTCC GAAGCGTTTC 
TTCGATGTGG GCATCGCCGA ACAGCATGCC GTCACCTTCG CGGCCGGCCT GGCCACCCAG 
GGGTTTCGAC CGGTTTTCAC TGTCTACTCG TCGTTCCTGC AGCGGGCCTA TGACCTGGTG 
TTTCACGATG TCTGCCTGCA GAACCTGCCG GTTATCTTCG CCCTGGATCG AGCCGGCGTG 
GTGGGCAATG ACGGCCCGAC CCACCACGGC AGCCTGGATA TCTCCCTGCT GCGACACCTG 
CCCAATATGA CCGTCATGGC ACCCAGGGAC GAGAACGAAC TGCAACACAT GCTGGCAACC 
GCGCTGGGGA TGCAGGGACC GGTGGCCCTG CGCTACCCCC GCGGCAACGG CGTGGGAGTG 
GCGTTGGACC AGATCATTAC GCCATTGCCG GTCGGCCGGG CCGAAGTGCT GCGCGAAGGG 
AAGGACGGGG CGGTGCTGGC TCTGGGAAGC ATGGTCCATC CGGCTCTGGA GGCTGCTCTG 
CAGCTGGAGC GCGACGGTGG CCCCAGTCTG GCGGTGGTCA ACGCCCGCTT CGTCAAGCCG 
CTGGATGAAG AACTGATCCA GTTTTTGGCC CGCACCTACG GCCGACTGAT CACCCTGGAA 
GAGAACGCGC TGCAGGGCGG TTTCGGCAGC GCTGTCCTGG AACTTCTGGA GGAAAAGGGG 
ATTCGCGGCA CGCGGGTCCT GCGGCTGGGG TATCCCGACG CCCAGATCCC CCAGGGGGAC 
CAGGGAGTTT TGCGCGCCAT GCTGGGCCTG GACCCCGCCG GACTGGCTTC CTCCATGGAG 
GCGTTTCTGC GCCGGGATTG A 

 

Protein sequence

MALLDTIDSP ADLKRLPVSR LPQVAEELRR VIIQTCSTNG GHLAPSLGVV ELTIALHRVF 
STPEDKIVWD VGHQAYAHKL LTGRRDRFST LRKLDGISGF PKRDESPHDA FEVGHASTSI 
SAATGLAAAR DLAGRRNKVL AVIGDGSMTG GMAYEAMNHA GHMNRDMIVI LNDNEMSIAE 
NVGALSNFLT RTGSSEFVYR FKKNVESFLG RKDTVGKNLL HLAKKLEDSF KGFFTPGMLF 
EAFGFEYIGP IDGHDLPMLL ETLEKVKKYH DAVLIHVLTK KGKGYKPAED DPSLFHGVGP 
FDLESGRVLK GKGGAASYTA IFGSALCKLA ADDERVVAIT AAMPDGTGLI PFSRQFPKRF 
FDVGIAEQHA VTFAAGLATQ GFRPVFTVYS SFLQRAYDLV FHDVCLQNLP VIFALDRAGV 
VGNDGPTHHG SLDISLLRHL PNMTVMAPRD ENELQHMLAT ALGMQGPVAL RYPRGNGVGV 
ALDQIITPLP VGRAEVLREG KDGAVLALGS MVHPALEAAL QLERDGGPSL AVVNARFVKP 
LDEELIQFLA RTYGRLITLE ENALQGGFGS AVLELLEEKG IRGTRVLRLG YPDAQIPQGD 
QGVLRAMLGL DPAGLASSME AFLRRD