Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppro_1798 |
Symbol | secD |
ID | 4571725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter propionicus DSM 2379 |
Kingdom | Bacteria |
Replicon accession | NC_008609 |
Strand | - |
Start bp | 1924107 |
End bp | 1925699 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639755846 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_901468 |
Protein GI | 118580218 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTAAAG AAACCGGCTG GCGCATAAGC CTGATAGTTA TCTTCGCCCT GGTATCGCTT CTCTACCTGA CTCCAACGCT GGTGACGCAA CTCCCCTCCT GGTGGACCGG GCTGCTTCCC AAGGACAAGA TCCATCTGGG GCTCGACCTG CAGGGGGGGA CTCACCTGGT GCTGGAGGTG GATACCCAGA AGGCGGTGGA GGGGTCGCTG GATATCGTAG CCACCGACCT GGAAGATACC CTGAACAACA AGAACCTGCA CTTCAAGCGC ATCAGCCGCA CCGATTGGAA TAGGGTGACC CTGCTCCTGT ACGAGAAGGA TACCGCCGCA GCGGTGCAGA AGATGCTCAA GGACAAGTAT CCCGGCTACC AGCAGAGCCC GCTGTACGAT GACGGCGGTT TCGTGGCTTT AAACCTGAGC ATCACCGACG AGGCGGCCAA GGATCGCAAG GACAAGGCGG TGGCCCAGGC CCTGGAGACC ATCCGCAACA GGATCGACCA GTTCGGCGTC TCCGAGCCGG TCATCCAGCG CGAGGGGGTC GATCACATCG TGGTGCAGCT CCCCGGCATC AAGGACCCCC AGCGGGCCAT CGACCTGATC GGCAAGACCG CCCGTCTGGA GTTCAAGCTG GTGCGGGAGG ACATCCCGCC GGGCTCCATC TCCCTGCCCG ATGACGCCGA AATCATGAAG GAAAAAGAGG TTGATCCGGA TACCGGCGCC GTAAGCGAAG TACCCTATGT GCTGCAGAAG AAGGCGATGA TCACCGGCGA CCTGCTCACC GATGCCCAGG TGCGCATCGA CTCCCAGTTC AACCAGCCCT ACGTGGCCAT CGAGTTCAAC TCCCTGGGGT CCAAGCTGTT CGACCAGGTC ACCGCCGCCA ACGTGGGCAA GCGCTTCGCC ATCGTACTGG ACAACAACGT CTACTCGGCC CCGGTGATCC GCGAACGCAT CTCCGGCGGC AGCGCCCAGA TCTCGGGCAA CTTCACCGAG AAGACCGCCG CCGACCTGGC CATCGTGCTC AGGGCCGGCG CCCTGCCTGC ACCGGTGAAG ATCATCCAGA ACGAGACCGT CGGACCCTCC CTGGGGCAGG ACTCCATCAC CAAGGGGCTG ATGGCCGGCC TGATCGGAAT TCTGGTGGTG GTGGTCTTCA TGGGGCTGTA CTACAAGCTG TCCGGCATGG TGGCAAACCT GGGCATGGTG ATGAACGTGC TCTACCTGAT GGGCGCCCTG GCGGCCCTGG GCGCCACACT GACCCTGCCC GGCATCGCCG CCATTGTGCT CCTGATCGGC ATGTCGGTGG ACGCCAACGT GATCATCTTC GAGCGCATCC GCGAGGAGCT CAGGCTGGGC AAGTCGCCCA AATCGGCCCT GGACGCCGGC TATGACAAGG CCTTCCTGAC CATCATGGAC TCCCACGTCA CCACCCTGAT CACCGCGGCG GTACTGTTCC AGTTCGGCAC CGGTCCGGTG AAGGGCTTCG CGGTTTCCTT AAGCCTGGGG GTCATCATCA ACCTGTTCAC CTCGCTGATC GGCACCAAGG TGATCTTCGA CCTGTTCCTG TACAGGGGAA CCGTCAAGAA AATGAGCATA TAG
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Protein sequence | MPKETGWRIS LIVIFALVSL LYLTPTLVTQ LPSWWTGLLP KDKIHLGLDL QGGTHLVLEV DTQKAVEGSL DIVATDLEDT LNNKNLHFKR ISRTDWNRVT LLLYEKDTAA AVQKMLKDKY PGYQQSPLYD DGGFVALNLS ITDEAAKDRK DKAVAQALET IRNRIDQFGV SEPVIQREGV DHIVVQLPGI KDPQRAIDLI GKTARLEFKL VREDIPPGSI SLPDDAEIMK EKEVDPDTGA VSEVPYVLQK KAMITGDLLT DAQVRIDSQF NQPYVAIEFN SLGSKLFDQV TAANVGKRFA IVLDNNVYSA PVIRERISGG SAQISGNFTE KTAADLAIVL RAGALPAPVK IIQNETVGPS LGQDSITKGL MAGLIGILVV VVFMGLYYKL SGMVANLGMV MNVLYLMGAL AALGATLTLP GIAAIVLLIG MSVDANVIIF ERIREELRLG KSPKSALDAG YDKAFLTIMD SHVTTLITAA VLFQFGTGPV KGFAVSLSLG VIINLFTSLI GTKVIFDLFL YRGTVKKMSI
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