Gene Ppro_1798 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpro_1798 
SymbolsecD 
ID4571725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter propionicus DSM 2379 
KingdomBacteria 
Replicon accessionNC_008609 
Strand
Start bp1924107 
End bp1925699 
Gene Length1593 bp 
Protein Length530 aa 
Translation table11 
GC content62% 
IMG OID639755846 
Productpreprotein translocase subunit SecD 
Protein accessionYP_901468 
Protein GI118580218 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTAAAG AAACCGGCTG GCGCATAAGC CTGATAGTTA TCTTCGCCCT GGTATCGCTT 
CTCTACCTGA CTCCAACGCT GGTGACGCAA CTCCCCTCCT GGTGGACCGG GCTGCTTCCC
AAGGACAAGA TCCATCTGGG GCTCGACCTG CAGGGGGGGA CTCACCTGGT GCTGGAGGTG
GATACCCAGA AGGCGGTGGA GGGGTCGCTG GATATCGTAG CCACCGACCT GGAAGATACC
CTGAACAACA AGAACCTGCA CTTCAAGCGC ATCAGCCGCA CCGATTGGAA TAGGGTGACC
CTGCTCCTGT ACGAGAAGGA TACCGCCGCA GCGGTGCAGA AGATGCTCAA GGACAAGTAT
CCCGGCTACC AGCAGAGCCC GCTGTACGAT GACGGCGGTT TCGTGGCTTT AAACCTGAGC
ATCACCGACG AGGCGGCCAA GGATCGCAAG GACAAGGCGG TGGCCCAGGC CCTGGAGACC
ATCCGCAACA GGATCGACCA GTTCGGCGTC TCCGAGCCGG TCATCCAGCG CGAGGGGGTC
GATCACATCG TGGTGCAGCT CCCCGGCATC AAGGACCCCC AGCGGGCCAT CGACCTGATC
GGCAAGACCG CCCGTCTGGA GTTCAAGCTG GTGCGGGAGG ACATCCCGCC GGGCTCCATC
TCCCTGCCCG ATGACGCCGA AATCATGAAG GAAAAAGAGG TTGATCCGGA TACCGGCGCC
GTAAGCGAAG TACCCTATGT GCTGCAGAAG AAGGCGATGA TCACCGGCGA CCTGCTCACC
GATGCCCAGG TGCGCATCGA CTCCCAGTTC AACCAGCCCT ACGTGGCCAT CGAGTTCAAC
TCCCTGGGGT CCAAGCTGTT CGACCAGGTC ACCGCCGCCA ACGTGGGCAA GCGCTTCGCC
ATCGTACTGG ACAACAACGT CTACTCGGCC CCGGTGATCC GCGAACGCAT CTCCGGCGGC
AGCGCCCAGA TCTCGGGCAA CTTCACCGAG AAGACCGCCG CCGACCTGGC CATCGTGCTC
AGGGCCGGCG CCCTGCCTGC ACCGGTGAAG ATCATCCAGA ACGAGACCGT CGGACCCTCC
CTGGGGCAGG ACTCCATCAC CAAGGGGCTG ATGGCCGGCC TGATCGGAAT TCTGGTGGTG
GTGGTCTTCA TGGGGCTGTA CTACAAGCTG TCCGGCATGG TGGCAAACCT GGGCATGGTG
ATGAACGTGC TCTACCTGAT GGGCGCCCTG GCGGCCCTGG GCGCCACACT GACCCTGCCC
GGCATCGCCG CCATTGTGCT CCTGATCGGC ATGTCGGTGG ACGCCAACGT GATCATCTTC
GAGCGCATCC GCGAGGAGCT CAGGCTGGGC AAGTCGCCCA AATCGGCCCT GGACGCCGGC
TATGACAAGG CCTTCCTGAC CATCATGGAC TCCCACGTCA CCACCCTGAT CACCGCGGCG
GTACTGTTCC AGTTCGGCAC CGGTCCGGTG AAGGGCTTCG CGGTTTCCTT AAGCCTGGGG
GTCATCATCA ACCTGTTCAC CTCGCTGATC GGCACCAAGG TGATCTTCGA CCTGTTCCTG
TACAGGGGAA CCGTCAAGAA AATGAGCATA TAG
 
Protein sequence
MPKETGWRIS LIVIFALVSL LYLTPTLVTQ LPSWWTGLLP KDKIHLGLDL QGGTHLVLEV 
DTQKAVEGSL DIVATDLEDT LNNKNLHFKR ISRTDWNRVT LLLYEKDTAA AVQKMLKDKY
PGYQQSPLYD DGGFVALNLS ITDEAAKDRK DKAVAQALET IRNRIDQFGV SEPVIQREGV
DHIVVQLPGI KDPQRAIDLI GKTARLEFKL VREDIPPGSI SLPDDAEIMK EKEVDPDTGA
VSEVPYVLQK KAMITGDLLT DAQVRIDSQF NQPYVAIEFN SLGSKLFDQV TAANVGKRFA
IVLDNNVYSA PVIRERISGG SAQISGNFTE KTAADLAIVL RAGALPAPVK IIQNETVGPS
LGQDSITKGL MAGLIGILVV VVFMGLYYKL SGMVANLGMV MNVLYLMGAL AALGATLTLP
GIAAIVLLIG MSVDANVIIF ERIREELRLG KSPKSALDAG YDKAFLTIMD SHVTTLITAA
VLFQFGTGPV KGFAVSLSLG VIINLFTSLI GTKVIFDLFL YRGTVKKMSI