| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_1596 |
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| Symbol | |
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| ID | 4571605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter propionicus DSM 2379 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008609 |
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| Strand | - |
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| Start bp | 1706056 |
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| End bp | 1707159 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639755640 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_901269 |
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| Protein GI | 118580019 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD
[TIGR01508] 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000393826 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACG ACATCAGGCA GATGAAACGG GCCCTGGCCC TGGCACGCAG GGGGATCGGC
AAGACCTCCC CCAACCCGGC GGTGGGATGC GTCATCGTCA AGGACGGGGT CATCGTCGGC
ACGGGGTGGC ACCGGAAGGC AGGCACCTCC CATGCTGAGA TCCATGCCCT TGAGATGGCA
GGAGAGAGCG CCCGGGGAGC CGACGTGTTT GTGACCCTGG AGCCCTGTTG TCACACCGGA
AAGACCCCCC CTTGCAGTCA GGCACTGATC CGGGCAGGGG TGAGACGGGT GGTGGCCGGC
ATGTCGGATC CCAACCCCCG GGTCAGCGGC GGCGGCCTGG CCGAGCTGGA GACGGCCGGC
ATCCAGGTCG TCTGCGGTGT CCTTGAGAAG GAGTGCCGCG ACCTGAACCG CCCCTTCATC
AAGCAGGTCA CCACCGGCAT GCCCCATGTC ACCTACAAGT GCGCCATGAC CCTGGACGGC
AAGATCGCCA CCGTGAGCGG CGCATCGCGC TGGATCAGCT GCCAGGAGTC CCGCACACTG
GTTCACCGCA TGCGGGCGCG CATGGATGCA ATCATGGTAG GAGTGGACAC CATCATCGCC
GACGACCCGC AGCTGACGGT TCGCCACGTA AGGGGCAGGA ACCCGCTGCG GGTGGTGGTG
GACACGCGCC TGCGTACCCC GGAGAGCGTC AGGGTACTCG GCGACGGCAA TGCGGTCAAC
ACCCTCATCG CCACCGCGGA AACCAACCCG CGCGTGCATC TGCGCTACCA GAACCAGGGG
GCCACCATCC TGGTGTGCGA TCAGGAGAAC GGCCGCGTTT CCATGAAAGA CCTGATGTTC
AAGCTGGGCA AACGGGGGGT GCAGTCCATC CTGCTGGAGG GTGGAGGGCG CCTGGCCGGA
AGCATGCTGG AACAGGGGCT GATCGACGAA TTCGTCTTCT TCCTGGCACC CAAAATTCTG
GGAAGCGACG GTTTTTCACC GTTCAGCCTG GTGGGAAGGA CAAGCATGGA GCAGGCATCC
AGGCTGAACA TTATCAAAGT GAGCCGCAGC GGCATCGATA TCGTCGTGCA TGCGCGGTCG
GAGGCGCCAT GTTCACCGGC CTGA
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| Protein sequence | MTDDIRQMKR ALALARRGIG KTSPNPAVGC VIVKDGVIVG TGWHRKAGTS HAEIHALEMA
GESARGADVF VTLEPCCHTG KTPPCSQALI RAGVRRVVAG MSDPNPRVSG GGLAELETAG
IQVVCGVLEK ECRDLNRPFI KQVTTGMPHV TYKCAMTLDG KIATVSGASR WISCQESRTL
VHRMRARMDA IMVGVDTIIA DDPQLTVRHV RGRNPLRVVV DTRLRTPESV RVLGDGNAVN
TLIATAETNP RVHLRYQNQG ATILVCDQEN GRVSMKDLMF KLGKRGVQSI LLEGGGRLAG
SMLEQGLIDE FVFFLAPKIL GSDGFSPFSL VGRTSMEQAS RLNIIKVSRS GIDIVVHARS
EAPCSPA
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