| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0565 |
|---|
| Symbol | |
|---|
| ID | 4572468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 600527 |
|---|
| End bp | 601447 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639754602 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_900254 |
|---|
| Protein GI | 118579004 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.789528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCA AGAAAACAAT CAACGACGAA GTCTCCGGCC GGCGGCTGGA CGAGGCGCTT
TCCCTGCTCT GCGACCAGGT CAGCAAGTCC GAGGCGCGGC GGATCATCGA CCGGGGCGGC
TGCAACCTGA ACGGCAGCAT GGTGCGGGTT GCCTCACGGA TGGTGAGAAG CGGCGATACC
ATCGACGTCG GCGTCATGGA ACCGGGCCGC TTCCGCGACC TTGTGCTGCC GCAGGAGGCG
CTGCTCCATG AGGATGACGA CCTGATCGCC CTGAACAAGC CGGCCGGTGT CAACACCCAG
CGTACCCCCT ATCAGCTCAA GGGAACCCTG GAGTACTGGG CAAGCGAGTA CTTCCGCCGG
CAGGGGAACC CCGAACCGGC CCGGGTGATC CACCGCCTGG ACCGCGGCAC CTCAGGGGTG
ATGCTCTTTC CCAAACACAA GCGGGCAGCT GCCTGGCTGT CGAAGCGCTT CCACGACGGC
CAGGTGGAGA AGCGCTATCT GGCCCTGGTG AGTGGCACGC CGGGCCAGAT CGAGTGGAGG
GTGGACGGCC CCATCGGCAA GATCGCCAGT GCCCGTTACG GCATCGTTGC CGGAGGGCGT
TCGGCCCTGA CCGAGTTCCG CCTGCTGGCC GAGTCTTGCG GATATGCCCT GGTTGAGGCC
AAGCCGCTCA CCGGCCGCAC CCACCAGATC CGTGTGCATC TGCAGTCGTG CGGCCTGCCC
ATCGTGGGGG ACGGGACCTA TGGCGGCGAG CCTGCTGCGC GCATGATGCT GCACTGCGCA
TCCCTGCGCT TCGCGGATGG CGGGGGGAGA GAGATCGTCG TCGAGGCGCC GCTGGATAGG
GACTTCAGGG GACTCATGGA AGAAAGGGGG GTGGCCATGA CGGCCCCGGG GTTGCTGAAC
GGCACGGTCC CGGTTCCTTG A
|
|---|
| Protein sequence | MIIKKTINDE VSGRRLDEAL SLLCDQVSKS EARRIIDRGG CNLNGSMVRV ASRMVRSGDT
IDVGVMEPGR FRDLVLPQEA LLHEDDDLIA LNKPAGVNTQ RTPYQLKGTL EYWASEYFRR
QGNPEPARVI HRLDRGTSGV MLFPKHKRAA AWLSKRFHDG QVEKRYLALV SGTPGQIEWR
VDGPIGKIAS ARYGIVAGGR SALTEFRLLA ESCGYALVEA KPLTGRTHQI RVHLQSCGLP
IVGDGTYGGE PAARMMLHCA SLRFADGGGR EIVVEAPLDR DFRGLMEERG VAMTAPGLLN
GTVPVP
|
|---|
| |