| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0412 |
|---|
| Symbol | |
|---|
| ID | 4573041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 428133 |
|---|
| End bp | 429566 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639754451 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_900104 |
|---|
| Protein GI | 118578854 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGAC TACTCGTTCT CACACTCGCA ACCCTGCTTG CCGGTTGCAT GATCGGCCCG
GACTACCACA GACCGGTGGT GGAAACTCCA TCCTCCTTCA TATACGAAGA CAAGGAGGCC
CGTGCCACGG CGGACACCGA ATGGTGGAAG CAGTTCCAGG ACCCGGTGCT CGATGCTCTG
ATTAGTGATG CCCTTACCAA CAACAAGAAC ATCAAGATCG CTGCCGCCAA CATCGAACAG
GCCTCAGGGT TCCTGACCCA GACCCGCTCC CCGCTCTTCC CGCAGCTGGG CTATGGCGCC
GATGCCGGGC GTCAGCGGCT GAGCGAAAAC AACGCCATCC CCGTCTCTCC CGGTATCAAC
AACCCCCAGG ATTACTTCCA GCTCTTCGGC GGCGCCAGCT GGGAGCTGGA TCTCTGGGGC
CATGTCAGGC GCCTCTCCGA GTTCGCACGG GCCAACCTGC TGGCCAATCA GGAGGCACGC
CGCGGCGTGA TTCTCACCCT GGTGGCAGCG GTGGCGGGCG ACTACCTGCA GCTGCGCGGG
CTGGACGAAC AGCTGGTGAT CTCAAAGCGC AACCTGGCGG CCTATGCCGA TTCGGTGAAA
CTGTTTGAAC TGCAGTTCCA GTACGGCCAG ATATCCATGC TGAACGTCCA GCAGGCCCGC
ACCCAGTATG AGACCGCGGC GGCAACCATA TCGCAGATCG AATCCCAGAT CAGCCAGCTG
GAGAATGCCT TGTCGATCCT GCTGGGCCGC AATCCGGGAT CGATTCCGCG CGGCAAGACG
ATCCATCAGT TGGCCTCCCC GGCTGTTCCG GCAGGTCTCC CCTCCCAGCT GCTTGAGCGC
CGGCCGGACC TGGCGCAGGC CGAACAGAAC CTGATCGCCG CCAACGCCCA GATCGGCGCG
GCAAAGGCGC TCTACTTCCC GACCATCTCG CTTACCGGTA ATTTCGGCTT TGCCAGCGAG
AACCTCTCCG ATCTCTTCAA GGGGCCGAGC AAGCTCTGGA GTTATGGCGG CTCGATTACC
GGCCCTATCT TCACCGCCGG CGCCATCTCT GGTCAGGTTA GGCAGAGCGA AGCACTACAG
AAGGCGGCGC TCCAAAGGTA CGAGGCTGCG ATTCAGAGTG CCTTTGCCGA CGTGGAAAAT
GCCCTGGTCA TCCGCCAGAA GTTGGCCGGA CAGCTTCTGG CCCAAGAGCG GCTGGTCAAG
GCCAGCCAGG AGTACGAGCA ACTGGCCAAG CTTCAGTATG ATGGAGGCTA CGCCCCCTAC
CTCACCGTTT TGAGCGCGCA GCAGCAGCTC TTCCCCGCCG AACTCACCCT TACCCAGTTG
CGCGCCTCGC TGCTTACATC CTACGCCAAC CTGTACAAGG CCATGGGTGG CGGCTGGGTG
GATGCGGCCG ACAGGCTGGC AGGCACGCCT CCCGCCGCGT CCCCTCGCCT GTAG
|
|---|
| Protein sequence | MRRLLVLTLA TLLAGCMIGP DYHRPVVETP SSFIYEDKEA RATADTEWWK QFQDPVLDAL
ISDALTNNKN IKIAAANIEQ ASGFLTQTRS PLFPQLGYGA DAGRQRLSEN NAIPVSPGIN
NPQDYFQLFG GASWELDLWG HVRRLSEFAR ANLLANQEAR RGVILTLVAA VAGDYLQLRG
LDEQLVISKR NLAAYADSVK LFELQFQYGQ ISMLNVQQAR TQYETAAATI SQIESQISQL
ENALSILLGR NPGSIPRGKT IHQLASPAVP AGLPSQLLER RPDLAQAEQN LIAANAQIGA
AKALYFPTIS LTGNFGFASE NLSDLFKGPS KLWSYGGSIT GPIFTAGAIS GQVRQSEALQ
KAALQRYEAA IQSAFADVEN ALVIRQKLAG QLLAQERLVK ASQEYEQLAK LQYDGGYAPY
LTVLSAQQQL FPAELTLTQL RASLLTSYAN LYKAMGGGWV DAADRLAGTP PAASPRL
|
|---|
| |