Gene CFF8240_1208 details

Gene Information

• Locus tag: CFF8240_1208
• Symbol: mnmC
• ID: 4539163
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter fetus subsp. fetus 82-40
• Kingdom: Bacteria
• Replicon accession: NC_008599
• Strand: -
• Start bp: 1189313
• End bp: 1191151
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 639746578
• Product: 5-methylaminomethyl-2-thiouridine methyltransferase
• Protein accession: YP_892366
• Protein GI: 118475217
• COG category: [E] Amino acid transport and metabolism; [S] Function unknown
• COG ID: [COG0665] Glycine/D-amino acid oxidases (deaminating); [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.308297
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAACTT TTAGAGGCGA CGGACTTTAT AATTCTAAAT TTGATGATAT ATACTTTAAT 
ACAAATGAGC CTTTGATCGA ATGTGAACAT ACTTATAGCA GCGTCTTAGA TGAAATTAAT 
GCTAAATTTA TTGTTGTTGC AGAGGCTGGA TTTGGCACCG GACTAAATTT TTTTAGCACC 
GTTTTAAAGT TTCTAAGTTT AAATAGTACC GAACTTCACT ACATAGCCGT GGAGAAATAT 
CCTTTTAAAA AGAGCGAATT AAGAGAAATA TATCTTAAAT TTGAGATATT AAAACCGTTT 
TTTGATGAGT TTATAGAGCA ATATGAGATC TTAGATGGTG CATTGATTCG TATAAAGCTT 
TTAAATGAAA GAGTTATTTT AGATCTGTAC TTTGGTGATA TTTTAGATGC TTTTGATGAG 
CTTAGTTTTA GAGCAGACGC ATGGTATTTA GATGGATTTT CTCCTACTAA AAATCCAGAT 
ATGTGGAGCA AAGAAGTTTT TGATAGGCTC AGCAAGTTTT GTAAAAATAG AGCAAAAGTA 
CGTACTTTTA GCAGTGCTAA AATAGTTCAA AATAGATTTT TAGAGCATGG ATTTAGTATA 
AAAAAATTAA AAGGTCATTA TAAAAAACGC GAGATTTTAG AAGCTAGTTT GGAACATTCA 
AGCCCAAAAA TACTTAAAGA ACCGTGGTAT GCATTGCCAA ATATATCTAA ATTTAGTGAT 
GTTTTGATTA TCGGTGCAGG AGTAGCCGGG TTAGCGGCTG CTTTTAAATT TAAAAAGGCT 
GGATTTAATG TTTGTATAGC TGAAAAAATG AGTGAAGCTG CTACAAATGG AAGTTCAAAT 
TTAGCGGGAA TTTTGATGCC TCTTATAACT AAACCTAAGG TTGCTTTAGG AAATATGCAT 
ATGAGCGCTT TTTTATTTGC TAGGCATTTT TATGCAAATA GTCCGTTTGC TGATTTTTGC 
GGCGTTTATG ATTATGGTGT GAACGACTTA GAAAAAACAA GATTATCTCT TTGGGATAGT 
GAGATTTTTA AATTTGAAAA CGATTTTGAG CCGTATCCAA GAGCGTTTAT AAAAAGTGCC 
GCTCAAATAC GACCAAAAGA GCTTTGCATG AGTTTAGCGA GTGAGTTTGA TATAAAATAC 
GGTTATGAGT TTGAATCGAT AGAAAAAAGC ACGGGCGGTT ACGTAGTTAA ATTTAAAAAT 
TCAAAAAATA TTTTTTCATC TCTTGTGATA TTTGCTATGG GAGATGTTAG CACAAATCTG 
TTTCAAAACG TTTTTGCAGA CGAATTTATG CAGCTTAGCA GTGTCAGAGG TCAAGTAACT 
CACTTAAATA AAGTTTTAAA TTTAAATAGC GCATTTAGCG CTCGCGGTTA TATGTGCAAA 
GATGTTAGAG GCATACAAGT TGTAGGCGCG ACGTATGATA GAAATGATAA TCGCAGCGCA 
GCAAGAGCTA CCGATGATGA GAAAAATATA GATTCTTTAT CTGAGTTTAT AACAAATTTA 
GATGTTAAAG TAGTAGGTTC AAATGTTGGA TTTAGAGGAT ATAGCGGCGA TAGATTTCCA 
ATTGTAGGTG CCGTGCATAA TGCTAGTGAG TTTAAGAAAA TTTACAAATC TTTATTATGG 
ACAAAACATA GCAAAAACAA TGAATTTGCC GTTCACCACG AAAATATTTT GATAAGTAGC 
GCTCATGGTT CAAGAGGACT TGGAACTGCT ATTTTTGGAG CTGAAATTTT GCTAGATATC 
GCTTTAAATC GTCCTGTTTG CACTACAAAC AGTATATTAA ACTCTCTAAA TCCTGCAAGA 
TTTTTAGTAA GAAAACTTAA AAGAGGTTTA GTTAGATAA 

 

Protein sequence

MITFRGDGLY NSKFDDIYFN TNEPLIECEH TYSSVLDEIN AKFIVVAEAG FGTGLNFFST 
VLKFLSLNST ELHYIAVEKY PFKKSELREI YLKFEILKPF FDEFIEQYEI LDGALIRIKL 
LNERVILDLY FGDILDAFDE LSFRADAWYL DGFSPTKNPD MWSKEVFDRL SKFCKNRAKV 
RTFSSAKIVQ NRFLEHGFSI KKLKGHYKKR EILEASLEHS SPKILKEPWY ALPNISKFSD 
VLIIGAGVAG LAAAFKFKKA GFNVCIAEKM SEAATNGSSN LAGILMPLIT KPKVALGNMH 
MSAFLFARHF YANSPFADFC GVYDYGVNDL EKTRLSLWDS EIFKFENDFE PYPRAFIKSA 
AQIRPKELCM SLASEFDIKY GYEFESIEKS TGGYVVKFKN SKNIFSSLVI FAMGDVSTNL 
FQNVFADEFM QLSSVRGQVT HLNKVLNLNS AFSARGYMCK DVRGIQVVGA TYDRNDNRSA 
ARATDDEKNI DSLSEFITNL DVKVVGSNVG FRGYSGDRFP IVGAVHNASE FKKIYKSLLW 
TKHSKNNEFA VHHENILISS AHGSRGLGTA IFGAEILLDI ALNRPVCTTN SILNSLNPAR 
FLVRKLKRGL VR