| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CFF8240_0985 |
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| Symbol | |
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| ID | 4538714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter fetus subsp. fetus 82-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008599 |
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| Strand | - |
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| Start bp | 987470 |
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| End bp | 990541 |
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| Gene Length | 3072 bp |
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| Protein Length | 1023 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 639746364 |
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| Product | type I site-specific deoxyribonuclease HsdR |
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| Protein accession | YP_892153 |
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| Protein GI | 118474840 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.271239 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCAA ACGTATCTGA GAACCAAATC CAGCAAAACT GTATAAATTT GCTCCGAAAT
ATGGGCTATG AGTTTATCGC TAGAGAGCAA AACATATCTT TTAGAGACGG TAAGACGTCC
GGCGTACTGC TCAAAGAGAT GTTGGCTAAA AAGCTTTATG AGATAAACAG CTATGAGTAC
AAAGGACAAA AGTATAAATT TAGCCAAAAC AACATCGCTA AAGCCATAGA AGATATAGAC
GTGTCACTAA ACGAAGGCTT GATGGTGGCA AACGAAAAGA TCACGAATCG CCTGCTTTTA
GGCACTAGCT ATGAAGAGAG CTTGACAGAT GGGAGTAAAA AGAGCTTTTC TTTTAAGTAC
ATAGACTTTG ACGATATAGA AAATAACCAT TTTTTGATCA CGGAAGAATT TGCCCTAGAA
CGCATAAATC AAAACGAAAC GATAAAGACG CGTCGCCCTG ATCTGGTGAT ATTTATAAAC
GGGATACCGC TTGTCGTGAT AGAACTCAAA AAATCAAGCG TAAGCTATGA AAACGGCGTA
AGACAGCTTG CCATGGAGCA AAAAAATGAT GAAATCCCGC AGCTTTTTAA ATTTATCCAA
CTCACGGTAG CCGGAAATAG CAACGAAGCA AGATACGGCA CCACCGGCAC TCCGGCTAAA
TTTTATGGTA TATGGAAAGA AGATGAGCTA AGAGAGTCAA ATTTGGCAAT GATAGTGCAT
GATAGGCAGA TCACGAGTCT TGATAGGACG CTTTTTGCGC TAGTTAGCCG AGATAGACTC
TTAAGACTAA TAAAACACTA TATTTTGTTT GATAAAAAAG CAAAAAAAGT CTGCAGATAT
CAGCAGTTTT TTGGTATAGA AAAAACATTG CAAAGAGTAG AGCGGACGGA TAACGGCATG
AGAGCCGGCG GGCTTATCTG GCATACTCAA GGAAGCGGTA AGTCTCTCAC GATGGTGATG
CTCACAAAAC TACTCAAGCT AACTTATACA AAAGCAAAGA TCATAGTAGT GACTGATCGC
ATAGACTTAG ATGAGCAGAT ACATAGGACT TTTGAAAATA CAGAGATAAA AGCGAGTAGG
GCGAGTAGTG GAAGCGACTT GATAGACAAG CTACAAAGCG GCGTAAGCGT GATAACTACT
CTTGTGCATA AATTTGAAAA AGTGTCAAAT TCGAAAGTTT GTATAAATGA CAATAGCATA
TTTGTCCTAG TAGATGAATC CCACCGCACG CAAAGTGGGG ATTTGCATAA TGCTATGAAA
AAAGCCTTGC CGTTTGCTTG CTATCTTGGA TTTACCGGGA CACCACTGCT CAAAAGAGAA
AAAAGCAGCT TTAATAAATT TGGCGGTGAG ATACATAGAT ATACGATAGG TGACGCGGTA
AAAGACGGCG CTGTTTTGCC TCTGTTATAT GAAGGTAGGC TAGTAGATCA AGAGGTTCTC
AGTCCTGAAG GGCTGGTACG TAAATTTGAT ATGATATCAA GAGATCTAAG CGACGAGGCC
AAAAGAGACT TGCAGCGTAA ATGGGCTAGA TTTCAGCGTG TGGCATCTAG CGAGCCAAGA
CTTGAATTTA TAGCGATGGA TATAAATGAG CATTTTAAAA AGACTTTAAA GATGCAAAAC
GGCGGATTTA AAGCGATGCT TGCGACAAGT AGCAAGTATG AAGCTATCAA GTATCATGAG
ATATTTGAAG AGTATGGAGA TATCAAGACA GCATATATCA TCTCTAGCAA CGAACATGAA
GAGCTTGAAG GCGGACATAA AGAGTATGTG GCGAAGTCTT GGCAAGAGAC TATAAAAGAC
TTTGGTAGCG AAGAAGAATA TGTAAAATAT GTAAAAGATG AGTTCATCCA TGGCGATGAG
ATAGATCTGC TAATAGTAGT CGATAAACTC CTAACTGGTT TTGATGCGCC AAGAGCTAGC
ACGTTATACG TAGATAAACA GCTCAAAGAG CATAATCTTT TGCAAGCTAT CGCTAGAGTA
AATAGGCTTT ATGATGGAAA AGATTATGGA TATATAGTCG ATTATCGTGG GCTTTTGGGT
GAACTGGATC AGGCTTTGAG CGATTATGCT TCTCTTAGTG AATTTGACAT AGATGATATA
AATGGTGCGG TTATAGACGT TAGAAACGAG ATAGCAAAAG CAAAGACTTA TTATGCAAAT
TTAGATAGCC TGTTTTGTGA AGTCAAATTT AAAGATGATC TTGAAAGCTA TGTAGAAGTA
TTGTCTGATA TCCAAAAAAG AGATGATTTT AAAGAGTGGC TATCTTACCT TGCTAGAGCC
TTTAAGCTGG CACTTTGTAG CGAAAAGGTG AGTGATATAC TAAGTCAAGA TGAGATAAAA
ACTTATAAAA GCAAGATCAA ATTTTATAAT GAACTAAGAC AAGTGGCACA GCTAAGATAT
CATGAGACTT GCGATTTTGG TAAATATGAA GCGCAAATGC AAAAACTACT AGATACCTTT
GTCAATGCAA ATGGCATAAA TGAGCTAACA AAGCTTGTAA ATATCTTTGA GACAGAATTC
GATGAAGAAG TACAGAGGGT CGAGGGTAAA AACGCCAAAG CCGATACGAT CTTAAGTGCT
ATAAGTGCCG TGATACAAGA AAGGATGGAG TCAAATCCTG CATTTTACAA ATCTATCTCA
GACCAGATCG AAGATGTGAT CAGCAAATAC AAAGAAAAAA GACTTAGCGA AGAAGAAAAA
CTAGCCAAGG CAAAACAGCT AAAAGGTCTC ATAACCGGCG CGATAAAGCC AAACATAGAT
AAATATCCAA AGGAATTTGA AAATAAAAAA TCTATATTTG CGATCTATGA TAATCTAGTT
GATATCTTAG GCGATATAGA AGTCCCAGAC TCAAAGCTCA TAATCAAAAA TTTGACTATC
AAATTTGATG AAATCTATGA AAAAGCATCA AAAAAGCCAG AATGGATCAA AAATAAAGAT
GTCGAAAATG ACATTACTAG CGCTATGGAA GACATGCTAT GGGATATAGA AGATGAGTAC
GGAATCTCTA TCGAGAATAA AGAAATGATT TATCAAACAA TCAGAGGTAT CGGGATCGGC
TTTTATGCTT GA
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| Protein sequence | MTPNVSENQI QQNCINLLRN MGYEFIAREQ NISFRDGKTS GVLLKEMLAK KLYEINSYEY
KGQKYKFSQN NIAKAIEDID VSLNEGLMVA NEKITNRLLL GTSYEESLTD GSKKSFSFKY
IDFDDIENNH FLITEEFALE RINQNETIKT RRPDLVIFIN GIPLVVIELK KSSVSYENGV
RQLAMEQKND EIPQLFKFIQ LTVAGNSNEA RYGTTGTPAK FYGIWKEDEL RESNLAMIVH
DRQITSLDRT LFALVSRDRL LRLIKHYILF DKKAKKVCRY QQFFGIEKTL QRVERTDNGM
RAGGLIWHTQ GSGKSLTMVM LTKLLKLTYT KAKIIVVTDR IDLDEQIHRT FENTEIKASR
ASSGSDLIDK LQSGVSVITT LVHKFEKVSN SKVCINDNSI FVLVDESHRT QSGDLHNAMK
KALPFACYLG FTGTPLLKRE KSSFNKFGGE IHRYTIGDAV KDGAVLPLLY EGRLVDQEVL
SPEGLVRKFD MISRDLSDEA KRDLQRKWAR FQRVASSEPR LEFIAMDINE HFKKTLKMQN
GGFKAMLATS SKYEAIKYHE IFEEYGDIKT AYIISSNEHE ELEGGHKEYV AKSWQETIKD
FGSEEEYVKY VKDEFIHGDE IDLLIVVDKL LTGFDAPRAS TLYVDKQLKE HNLLQAIARV
NRLYDGKDYG YIVDYRGLLG ELDQALSDYA SLSEFDIDDI NGAVIDVRNE IAKAKTYYAN
LDSLFCEVKF KDDLESYVEV LSDIQKRDDF KEWLSYLARA FKLALCSEKV SDILSQDEIK
TYKSKIKFYN ELRQVAQLRY HETCDFGKYE AQMQKLLDTF VNANGINELT KLVNIFETEF
DEEVQRVEGK NAKADTILSA ISAVIQERME SNPAFYKSIS DQIEDVISKY KEKRLSEEEK
LAKAKQLKGL ITGAIKPNID KYPKEFENKK SIFAIYDNLV DILGDIEVPD SKLIIKNLTI
KFDEIYEKAS KKPEWIKNKD VENDITSAME DMLWDIEDEY GISIENKEMI YQTIRGIGIG
FYA
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