Gene Acel_1279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcel_1279 
Symboldef 
ID4486350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidothermus cellulolyticus 11B 
KingdomBacteria 
Replicon accessionNC_008578 
Strand
Start bp1426434 
End bp1426976 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content66% 
IMG OID639730059 
Productpeptide deformylase 
Protein accessionYP_873037 
Protein GI117928486 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00526616 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0870351 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTGTCC GACCCATCCG GCTTTTCGGT GATCCAGTCC TGCGCACTCC TGCGGAACCG 
GTCACCGATT TCGACAAGGA GCTCCGCGTC CTGATCAAGG ACCTCATTGA GACGATGCAG
GACGCGCCCG GGGTCGGCCT TGCCGCGCCG CAGATCGGGG TGAGCCTCCG GGTCTTCGTG
TACGACGTTG ACGGTGTCGT CGGACACCTG GTCAACCCAT CGTTGGACCT CTCCGAGGAG
CAGCAGGACG GCGACGAGGG GTGCCTCTCC CTGCCGGGGC TCTCCTATCC GCTGAAACGT
GCGAAGCGGG CGGTCGCCAA GGGATTCAAC GAATTCGGCG AACCGGTCAT CCTCGAAGGC
AGCGACCTGC TGGCCCGGTG CGTGCAGCAC GAGACCGACC ACCTGGACGG CGTCCTGTTC
ATTGATCGCC TCGATCCTGA GCAGCGGAAG CTCGCCATGC GTGCGATCCG GGAGGCCGAA
TGGGCCGGCC AGACCGTCCG GGTCAAGACC TCCCCGCACC CCACGCGGGG AAAGGCACTG
TAG
 
Protein sequence
MAVRPIRLFG DPVLRTPAEP VTDFDKELRV LIKDLIETMQ DAPGVGLAAP QIGVSLRVFV 
YDVDGVVGHL VNPSLDLSEE QQDGDEGCLS LPGLSYPLKR AKRAVAKGFN EFGEPVILEG
SDLLARCVQH ETDHLDGVLF IDRLDPEQRK LAMRAIREAE WAGQTVRVKT SPHPTRGKAL