| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3965 |
|---|
| Symbol | |
|---|
| ID | 4480179 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4763139 |
|---|
| End bp | 4764860 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639728581 |
|---|
| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
|---|
| Protein accession | YP_871589 |
|---|
| Protein GI | 117922397 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
|---|
| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACCG AAAACACAGC CACACTGAAC CTGATGTGGG GCGCACTTAT TCTGGAAGAA
TTAGCACGTC TTGGTGTGCA GCATGTCTGC ATGGCACCGG GCTCACGCTC GACACCGCTA
ACCTTAGCGG CGGCTCAGCA AACCAAACTT AAACGTCACT TGCATTTCGA TGAGCGTGGC
TTAGGTTTTA TGGCCCTCGG ATTAGCCAAA GCCAGCTGCG CCCCCGTGGC GATTATCACC
ACCTCAGGCA CGGCCGTCGC CAACCTTTAT CCTGCGATAG TCGAAGCTTG GTTGACCCAT
GTACCCTTGA TTGTCCTAAG CGGTGACAGG CCGCCAGAGT TACTCGGTTG CGGCGCCAAC
CAAGCCATAG TGCAACCGGC GATTTTTGCC AATTATGCCC AGCAGGTAAA CCTGCCCACG
CCAGATGCGC ACATTGCACC GCAGATGTTA CTCACAACCC TCGATGAGGC GGTGGCAAAC
CAAACACGCC CAGTGCATAT CAACTGCATG TACCGCGAAC CTCTATATCC GAGTGAGATG
AGTGGCACCA TTCTCGATAG CGAATCGCCT TATCTGAGGC CACTACAAAC CTGGCTGCAA
CACGCCAAAC CCTACACTCA ATACGGTAAG AGTGAACAGC TCAGCAGCCC GAGCGATGAT
GCCATTATGC GTTTCGTCCA CGGTAAGGGC GTAATCATCG CGGGTACACT CACGCCGGAG
CAAGATCCAC AGCAACTCAT CGCCCTCTCA CAAAAGATTG GTTGGCCATT GCTGACCGAT
GCACAGTCAC AACTGCGGCA ACATCCCGCG GCGATAGGCA ATATTGACCA ACTACTGCAA
CATCCTAAGG CGCGCAATCT GTTGCAAGAG GCGGACCGCG TGCTGGTATT TGGTGGGCGC
TTATTGTCCA AGCGTTTGAT TGCTTACCTT GCCGAGCAAA ACTGGCACAG TTACTGGCAA
GTGCTGCCAC AGCAGGACAG GCTCGACCCA AGCCATAATG CCAAACACAT TTGGCACGCC
AACGCCGCGC AATTTGCTCA ACTTAATTGG TATCGTTCCT CTTCGGCCAA TTGGGCCAAC
ACCTTAGTCA CCTACAACGA TGAATTACAT AGTTTATTTG TACGTAATAT CGATCAAGGT
GAGTTTGGTG AGGCGCAGGT TATCCGCGCC ATTGCCAATA CGCGGCCGTT AGAGCAGCAA
TTGTTTATCG GCAATAGTCT GCCCGTGCGC TTATACGATA TGTACGCCCC AGTGAGTTGT
TGCACGGCCA CCACTTATAC CAACCGAGGC GCATCGGGGA TCGACGGCTT ATTGGCCACC
GCCTGCGGCA TTGCCGCGCA TCAAGGTAAA CCTACGAGCT TGATTATCGG GGACTTATCC
CAGCTGCATG ATCTCAACTC GTTTGCCATT GCCCGCAGCT TAACCAGCCC GTTGGTGATC
ATTATTCTCA ACAACGACGG CGGCAATATC TTTAATCTCT TGCCCGTTCC CAATGAGGAG
CTGCGCAGTG ATTACTACCG CTTAAGCCAT GGCCTAGAGT TTGGTTATGC CGCTGCTATG
TTTAATCTGC CATATAATCA AGTGGATAAT TTAGCCGACT TCCAAAGCTG TTATCACGAA
GCGCTGGATT ATCAGGGCGC CTCAGTGATC GAAGTCAGTG TAAGCCAACA CCAAGCCAGC
GAGCAGATCG CCGCGCTGAA TTTATGGGTG AAACAAAGCT AA
|
|---|
| Protein sequence | MRTENTATLN LMWGALILEE LARLGVQHVC MAPGSRSTPL TLAAAQQTKL KRHLHFDERG
LGFMALGLAK ASCAPVAIIT TSGTAVANLY PAIVEAWLTH VPLIVLSGDR PPELLGCGAN
QAIVQPAIFA NYAQQVNLPT PDAHIAPQML LTTLDEAVAN QTRPVHINCM YREPLYPSEM
SGTILDSESP YLRPLQTWLQ HAKPYTQYGK SEQLSSPSDD AIMRFVHGKG VIIAGTLTPE
QDPQQLIALS QKIGWPLLTD AQSQLRQHPA AIGNIDQLLQ HPKARNLLQE ADRVLVFGGR
LLSKRLIAYL AEQNWHSYWQ VLPQQDRLDP SHNAKHIWHA NAAQFAQLNW YRSSSANWAN
TLVTYNDELH SLFVRNIDQG EFGEAQVIRA IANTRPLEQQ LFIGNSLPVR LYDMYAPVSC
CTATTYTNRG ASGIDGLLAT ACGIAAHQGK PTSLIIGDLS QLHDLNSFAI ARSLTSPLVI
IILNNDGGNI FNLLPVPNEE LRSDYYRLSH GLEFGYAAAM FNLPYNQVDN LADFQSCYHE
ALDYQGASVI EVSVSQHQAS EQIAALNLWV KQS
|
|---|
| |