Gene Shewana3_3948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3948 
Symbol 
ID4480162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4746380 
End bp4747588 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content51% 
IMG OID639728564 
ProductBcr/CflA subfamily drug resistance transporter 
Protein accessionYP_871572 
Protein GI117922380 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCGCA ATCTGTTACC TATTTTGATG TCTTTGGTGC TACTCAGCCC ATTGGCGATT 
GATATTTATC TACCTTCTAT GCCAACCATG GCGGCAGAGT TCGCCGTGTC TGCCAGTGAA
GTGCAATCCA CCTTAGTGCT GTTTTTATTT GCTATGGGTG TGGGCCAAAT TTTGATTGGC
CCCTTAGCCG ACCGTTACGG ACGTCGACCC GTGGCACTCT TTGGTGTGTT GCTCTACGGC
GCGAGCAGTT TACTTGCCGC CGCTGCGATT GAATTCCATT GGTTACAACT TGCCCGTGTG
CTGCAAGGAT TAGCGGCGTG TTCAACCTCG ATTGTGGTCT TTAGCGCGGT GCGTGACTGT
TATTCGCCCA AGGAAGGTGC CCGTATCTAC AGTTACTTAA ATGGGGCTAT CTGCGTGATC
CCCGCACTGG CGCCCACCCT TGGCGGACTA TTAGCCATGC AATTTGGCTG GCGTTCGACC
TTTGTGTTTA TGACCTTATA CGCGATTTTG ATGATGCTAT TGGTGGGCTA TCGTTTACCC
GAAACCCGTC CAGCCAATAC CGTGAGCAGT GGTCCCTTGT ACCGCTGGAG TCGTTATAAA
CCTGTGCTGA GCAATACCCA TTTCTTGTTC TATGCCTTTG CCTGTATGTC GGCAATGGCG
GCGATTTTAA GTTATGTGTC TTACTCTCCC GTGTGGCTTA TCGGCCATTT AGGCGTGTCA
GAGTTAGCTT TTAGTGGTTT ATTTGGCTTG AATGCTTTGG TCAATATTGT GGCCTGTTTT
GCCGCGCCAG TGGTGATCCG CAAGTTAGGC AACCGTCCAA CCGCCATCCT TGCCTTAGTG
TTACTGGTGC TCTCGGCGGT ATTGATTATC GCAGCCCAAG CCTTTGGCCC AAGTGTGGGT
ATGGCTGCCG CCTTTGCCTT TATGTTGCCT ATGATGCTGT TGTGTATTGG TTTTGCTTTC
TTATTAGGCC CAGCGACCAG TATGGCACTG TCTGCCTTTG GCGAGCGCGC AGGCACTGCA
ACGGCGATGT TAGGTTTTAT TCAGATGAGT GGCGCGTCAG TCATTGCTGG CCTAGTACAG
CAAACTAGCC TGACTGCCCC CTATGCGGTG GCGTTAGTGA TGGGCGTATT TTCTGTCGGA
TTACTCTCGA TGATGGCATT AAGCCGCTTC GATCACTGGC ATCAAGAGCA GTTAGCCGCC
GAGCATTAA
 
Protein sequence
MRRNLLPILM SLVLLSPLAI DIYLPSMPTM AAEFAVSASE VQSTLVLFLF AMGVGQILIG 
PLADRYGRRP VALFGVLLYG ASSLLAAAAI EFHWLQLARV LQGLAACSTS IVVFSAVRDC
YSPKEGARIY SYLNGAICVI PALAPTLGGL LAMQFGWRST FVFMTLYAIL MMLLVGYRLP
ETRPANTVSS GPLYRWSRYK PVLSNTHFLF YAFACMSAMA AILSYVSYSP VWLIGHLGVS
ELAFSGLFGL NALVNIVACF AAPVVIRKLG NRPTAILALV LLVLSAVLII AAQAFGPSVG
MAAAFAFMLP MMLLCIGFAF LLGPATSMAL SAFGERAGTA TAMLGFIQMS GASVIAGLVQ
QTSLTAPYAV ALVMGVFSVG LLSMMALSRF DHWHQEQLAA EH