| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3932 |
|---|
| Symbol | |
|---|
| ID | 4480146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4726130 |
|---|
| End bp | 4727065 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639728548 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_871556 |
|---|
| Protein GI | 117922364 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00420556 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAAAC ACTTAGACTT AAACTTACTG CCCGTACTGG AAATTCTCCT CGAGGAGCAG
AGTGTCACGG CCGCAGCGGC GCGGCTGCAT TTGAGTCAGT CGGCGGTGAG CAAGCAATTG
ACTCGCCTGC GTGAAGTGTT TGATGACCCC TTATTCGAGC GCACCGCCTA CGGCCTCAAG
CCGACGCCCA AGGCGCTGTC GCTGGCGCCC GACTTGCGCC AATGCTTACA GCAATTAGCG
CAATTTACTC GGCCAGACAG TTTTGAGCCC GCCCTAAGTC AGCGCCAGTT TCGAATGCAT
CTGGTCGAAA CGACCTACTC GCTGACCTTC CCACACTTTA TGCCTTCGCT TTTAGCGCAG
GCGCCCGGTG TGAGCATTAA TTGCCAAACC TGGCGGCTGG ATACCATGGA TAGACTCCAA
CGCTGCGATA TCGATCTCGC CATAGGTTGC CGCGAATGGG ATGAGCGTTC GCCCATGCAT
GTAAACCATA TTCCGGATGA CATCCATTAT GTTGAATTGG TTCAGGATTA CACAGTTTGC
CTGATGCGCA GTGACCATCC TGCACTTTCG CAAGAATGGG ATCTCGATAC CTTTTTAAGT
TATCGCCAAT TACAGGTCGC CTTTGGTGGC TTGGAATATT GGTTGTTAGA CGATGTGCTG
CAAATCCAAG GGCGTAAACG GGATATTGCG GTGAATATGA CGGACTTTCA GAGTGCGCTG
GCCCTGTGTG AGCAGAGTGA TTTGATTCTC TGCGCTCCTT CCCGTTATGC CTTAGCGATG
ATGAAGTCGT TTGATCTTAA GTATTTACCA TCGCCAATTA AACTGATCCC CGGTGCCTAC
CTGCTGATGT GGCATAAGCA TTTCGAACAC GATCTCAGCC ATAAATGGCT GCGGGAGCTG
ATTATTAACA AAGTCAGCGC CTCGCTTCCT AACTGA
|
|---|
| Protein sequence | MLKHLDLNLL PVLEILLEEQ SVTAAAARLH LSQSAVSKQL TRLREVFDDP LFERTAYGLK
PTPKALSLAP DLRQCLQQLA QFTRPDSFEP ALSQRQFRMH LVETTYSLTF PHFMPSLLAQ
APGVSINCQT WRLDTMDRLQ RCDIDLAIGC REWDERSPMH VNHIPDDIHY VELVQDYTVC
LMRSDHPALS QEWDLDTFLS YRQLQVAFGG LEYWLLDDVL QIQGRKRDIA VNMTDFQSAL
ALCEQSDLIL CAPSRYALAM MKSFDLKYLP SPIKLIPGAY LLMWHKHFEH DLSHKWLREL
IINKVSASLP N
|
|---|
| |