| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3895 |
|---|
| Symbol | |
|---|
| ID | 4480106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4673446 |
|---|
| End bp | 4675500 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639728508 |
|---|
| Product | type IV pilus secretin PilQ |
|---|
| Protein accession | YP_871519 |
|---|
| Protein GI | 117922327 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000037843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.221034 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTT CTGCCGCGAT AAAAATCCCG TTATCGTTTT TATCTTCAGG CTTAGCCAAG
TCTGTTATTG GGATCGCATT AGTATTTGGA TTTTTGCCAT CGAGTTTTGC GGCAAATAGG
TTGATGGATG TCAAATACCA TGCTCTTGTC GATCATCAAT TAGAAGTCGA GTTAGTTTTT
GAGGAGGCGA TTAGCGCGCC CACAATTGAC TCTAATGCTT CTCCTGCTCA GTTGGTATTA
ACCTTCGATG ACAGTATTTC GGGTCTTTCT AAGGACCGCC TGCCGATTAA CCAAGTCGGT
GTGAAGGACA TAGTGACAAC GCAGCAAGAT GCCCACCTAA TGGTGACGTT GGGCTTATCT
AAGGTTAAAC CGTATCAAGG TAGTGTCGTT GGTAATTCTT ACCGTTTAAC CATTAACGAT
GAAGTTGCAG GCTCACAAGC GGGTAATAAT CCGTTCGTTA ATAGCGTTAA AAATATCGAT
TTCCGTCGCA ACGCGAATGG CGGTGGTGAT TTATTAGTCT ATTTAAATAA TCGCTCAGTT
GCGGCTAACG TTGAACAAAT AGGTGCCAAA CTTGAGGTTC AGCTTTACAA CACAGATATT
AACAGTGACT TGTTATATGT GATGGATGTG CAGGATTTCT CCACACCCGT AAAGCATTTT
GAAACCTTTA AGGACGATTT AACGACCCGG ATTTTAGTCG ATGTCTCAGG CAATTATGAG
TTCAATTACA AACAGGAAGA CAATCTCTTT AGGCTCTCAA TCAACAAAGT AGAGCGCGCT
GCTGCGACCA AAGAGGTGAA GAAATATAAC GGTAAAACCC TTTCGTTAAA TTTCCAGAAT
ATTTCGGTCC GTACTGTGTT GCAGATTATT GCCGACTACA ACAACTTCAA CTTAGTTACC
AGTGATACGG TTGAAGGCGA TATTACTTTA AGGCTCGATG ACGTGCCTTG GGACCAAGCA
TTGGACTTGA TCCTGCAAAC CAAAGGACTC GATAAGCGTA TCGAAGGTAA TATTCTGATG
GTGGCGCCAA GTGAAGAGTT GGCGATTCGC GAAAGCCAAA ACCTCAAGAA TAAGCAGGAA
GTAAAAGAGC TGGCGCCACT CTATTCTGAG TATTTGCAAA TCAACTATGC CAAGGCGACG
GATATTGCCG AGTTACTCAA AGGGGCGGAT TCTAGCTTAT TGTCACCACG TGGATCTGTG
GCTGTCGATG AGCGTACCAA TACCGTGTTA GTGAAAGATA CCGCTGAAAT CATCGAGAAT
ATTCATCGTT TGGTCGAAGT GCTCGATATT CCTATCCGCC AAGTGTTGAT TGAATCTCGC
ATGGTGACGG TAAAAGACGA CGTGTCTGAA GATTTAGGTA TCCGTTGGGG GGTAACTGAC
CAACAGGGAA GTAAAGGGAC GTCAGGAACG CTTGAAGGGG CTGGAAGCAT TGCTAATGGT
GTGGTTCCAT CTCTAGATAA TCGTTTGAAC GTGAATTTAC CTGCGGCGGT AACTAACCCA
ACCAGCATTG CTTTCCATGT GGCCAAGCTT GCCGATGGCA CTATTTTAGA TTTAGAGCTG
AGTGCGCTTG AGCAGGAAAA CAAAGGTGAG ATTATCGCGA GCCCTCGTAT CACCACCTCT
AACCAAAAGG CGGCGTATAT CGAGCAGGGT GTGGAAATCC CTTATGTGCA ATCCACTTCC
AGCGGCGCCA CGTCGGTGAC CTTTAAGAAG GCTGTATTGT CATTAAGAGT GACACCACAA
ATTACGCCTG ATAACCGTGT AATTCTGGAT CTTGAAATCA CTCAAGACTC TCAGGGTAAA
ACGGTGGATA CTCCCACTGG TCCGGCAGTC GCTATCGATA CTCAACGTAT TGGTACGCAA
GTGTTAGTGG ATAATGGGGA AACCATTGTG CTTGGTGGTA TCTATCAACA GAACTTGATC
AGCCGCGTGA GCAAGGTGCC TATCCTGGGT GACATACCTT TAGTTGGCTT CTTATTCCGT
AACACTACCG ACAAGAATGA GCGACAAGAG CTGTTGATTT TCGTGACGCC TAAGATTGTG
AACGAGAAAC TCTAA
|
|---|
| Protein sequence | MKSSAAIKIP LSFLSSGLAK SVIGIALVFG FLPSSFAANR LMDVKYHALV DHQLEVELVF
EEAISAPTID SNASPAQLVL TFDDSISGLS KDRLPINQVG VKDIVTTQQD AHLMVTLGLS
KVKPYQGSVV GNSYRLTIND EVAGSQAGNN PFVNSVKNID FRRNANGGGD LLVYLNNRSV
AANVEQIGAK LEVQLYNTDI NSDLLYVMDV QDFSTPVKHF ETFKDDLTTR ILVDVSGNYE
FNYKQEDNLF RLSINKVERA AATKEVKKYN GKTLSLNFQN ISVRTVLQII ADYNNFNLVT
SDTVEGDITL RLDDVPWDQA LDLILQTKGL DKRIEGNILM VAPSEELAIR ESQNLKNKQE
VKELAPLYSE YLQINYAKAT DIAELLKGAD SSLLSPRGSV AVDERTNTVL VKDTAEIIEN
IHRLVEVLDI PIRQVLIESR MVTVKDDVSE DLGIRWGVTD QQGSKGTSGT LEGAGSIANG
VVPSLDNRLN VNLPAAVTNP TSIAFHVAKL ADGTILDLEL SALEQENKGE IIASPRITTS
NQKAAYIEQG VEIPYVQSTS SGATSVTFKK AVLSLRVTPQ ITPDNRVILD LEITQDSQGK
TVDTPTGPAV AIDTQRIGTQ VLVDNGETIV LGGIYQQNLI SRVSKVPILG DIPLVGFLFR
NTTDKNERQE LLIFVTPKIV NEKL
|
|---|
| |