| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3888 |
|---|
| Symbol | |
|---|
| ID | 4480099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4667789 |
|---|
| End bp | 4668466 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639728501 |
|---|
| Product | ribulose-5-phosphate 3-epimerase |
|---|
| Protein accession | YP_871512 |
|---|
| Protein GI | 117922320 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
|---|
| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.384968 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCAT TTTTAATTGC TCCATCGATT TTATCCGCCG ATTTCGCCCG TTTAGGGGAT
GACGTTAAAG CCGTGTTAGA TGCAGGGGCT GACGTAGTAC ATTTTGATGT GATGGATAAC
CACTATGTGC CCAACTTAAC CATTGGCCCT ATGGTGTGCA AAGCGTTACG CGACTATGGC
ATCACGGCCG ATATCGATGT GCATTTAATG GTTAAGCCTG TTGACCGTAT CGTGCCTGAT
TTTGCCAAGG CGGGTGCGTC TATTATTACT TTCCACCCAG AGGCCTCTGA GCATATCGAC
CGCACTCTGC AACTGATTAA AGAATCGGGT TGTAAAGCGG GTTTAGTGTT TAACCCAGCA
ACGCCGCTGC ACTATCTTGA CCATGTAATG GATAAGTTAG ATGTGATTCT GCTGATGTCA
GTCAACCCAG GTTTTGGCGG CCAATCCTTT ATTCCTTCGA CTTTAGATAA ATTACGCCAA
GTGCGTGAGC GTATCGATGC CAGCGGGTTC GATATTCGTT TAGAAGTCGA TGGTGGCGTT
AAAGTGGATA ACATTGCTGA AATCGCCGCC GCAGGCGCCG ATATGTTTGT CGCCGGCTCT
GCCATTTTCG GTAAACCAGA CTATAAAGCC GTCGTCGACG AGATGCACGC CGAGTTAGCG
AAAGTAGAGG CCAAATAA
|
|---|
| Protein sequence | MRPFLIAPSI LSADFARLGD DVKAVLDAGA DVVHFDVMDN HYVPNLTIGP MVCKALRDYG
ITADIDVHLM VKPVDRIVPD FAKAGASIIT FHPEASEHID RTLQLIKESG CKAGLVFNPA
TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPSTLDKLRQ VRERIDASGF DIRLEVDGGV
KVDNIAEIAA AGADMFVAGS AIFGKPDYKA VVDEMHAELA KVEAK
|
|---|
| |