| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3873 |
|---|
| Symbol | |
|---|
| ID | 4480083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4650674 |
|---|
| End bp | 4651828 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639728486 |
|---|
| Product | porin |
|---|
| Protein accession | YP_871497 |
|---|
| Protein GI | 117922305 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0642035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CATGCATCGC GTTAATGCTA CCCATGCTGT TGGCCGCCAC CAGCAGCCAA
GCGGTTGAAC TCTATAACGA TCAAAAAAAC TCATTAGATT TAAGTGGTTG GTTAGGCTTC
GCGGCACTCA ACGACAGCCA CGATACCTCA GTAATTGATG ACTCCTCCCG AGTACGATTT
AGCTTTGAAC GCAGCGAGAG AAATGGCTGG ACCGCCTTTG CCACCACGGA ATGGGGCATC
AACATGGTGT CCAGCGATGA CAGTTTAGTG ATGCAAGGTG GCAAACTGGC CGCCGAAAAA
ACCGAAGACT TCCTCTATAA CCGTTTAGGT TATGTCGGTA TGTCGCACGA TGAATGGGGT
AGCCTCAGTT TTGGTAAGCA ATGGGGCGCT TACTACGATG TTGCAGGCAC GACAGATTTA
CCGAACGTCT TCGCCGGATA TAGTGTCGGC GCCTACGCCT TTAGCGATGG CGGCTTAACC
GGAACAGGCC GTGCCGACTC CGCGTTTATC TATCGAAATA GCTTTGGCCC AGTGCAAATT
GCCCTGCAAT ACGCCGCCAA AACCAATGGT GATGTCACCT TAAAAAACGA TGACGGCAGC
GAAATGACCA ACTCTGAGCT TAATTTCGAC AGCAGTTACG GTGCCAGCCT GACCTACTCA
CTCACCGATA AATTTAAACT GCTCGCCGGC TTTAACCGTG GCGACTTTGA AGGCCATCTA
GGCAACACTC AAGTCGATGA AACTAACGAA ATCGTCGGTA TCGGCGCCAT GTATGGTGAT
TACTATCACT ACGCCGATAA CCGCGAAGCC AGCGGTCTCT ACGTCGGCTT TAACGCCCAT
CAGAGTAAGA ACAATGAGTT GGTCGGCGGC GAACTCTACG ATGCCACCGG CGCCGAGCTG
ATGACGGCCT ATCAATTCGA TAACGGTTTT GTGCCTATGA TTGTCCTCAG CTATTTGGAC
TTAGACACAG ATGCCAGCAC GCCCATCCAA GGCAAATGGA CCCGCCAATT CGCCATGCTT
GGCCTGCACT ACCGTTACAG TAACGACACT GTGATGTTTG CCGAAATGAA GTTAGATTTC
AGCGACATGG ATGACCCAGC ACTCGAAGCG CAGGAAGATA ATGGCTTTGC GGTAGGGATT
AACTACTTCT TTTAG
|
|---|
| Protein sequence | MKKTCIALML PMLLAATSSQ AVELYNDQKN SLDLSGWLGF AALNDSHDTS VIDDSSRVRF
SFERSERNGW TAFATTEWGI NMVSSDDSLV MQGGKLAAEK TEDFLYNRLG YVGMSHDEWG
SLSFGKQWGA YYDVAGTTDL PNVFAGYSVG AYAFSDGGLT GTGRADSAFI YRNSFGPVQI
ALQYAAKTNG DVTLKNDDGS EMTNSELNFD SSYGASLTYS LTDKFKLLAG FNRGDFEGHL
GNTQVDETNE IVGIGAMYGD YYHYADNREA SGLYVGFNAH QSKNNELVGG ELYDATGAEL
MTAYQFDNGF VPMIVLSYLD LDTDASTPIQ GKWTRQFAML GLHYRYSNDT VMFAEMKLDF
SDMDDPALEA QEDNGFAVGI NYFF
|
|---|
| |