| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3851 |
|---|
| Symbol | |
|---|
| ID | 4480061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4624559 |
|---|
| End bp | 4625701 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639728464 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_871475 |
|---|
| Protein GI | 117922283 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.344739 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATAA ATAGTGACAA TTCAACTTTA TTAACATTTA TTGAAATCAT AAAATTTGAG
GCAAGTGAAA AATATTTGAT AAAAAAATAT TTTGATTATC GTATTTGTAC TACAGCGATA
CTGTTATTAC TAATACCCTT AGGATTTGCA GAAGGCTTAT TTGACCATAT AACCACACCT
GAATTGAATG GTGAGCTACT AGAACTTAGA TTATATATGT TTTTTTTGAT TATCCCTGCG
ATTTTAACAT TTAAGGCAAA GAGTGTTAAA ATCGCAACAG CAACTATTAT TGTGACTGTG
ATCTTCATAT CTTTTCTTTC AATAAAAATG GCTGAGATTT TAGGTGAAGA GGCTATTTAT
ACAGTTACTA CCGTGGCTAT TTACCCTTTC CTTATATTCT TCATTTTAAT TGGACTTTCA
ATATACATCC AAATTACTGC CCTATTTTCT GCTTTTTTGT TTGTTATACA TTACAAGTTA
GATGCAGCTA CGAATATGGA TCTGCAAAAC ATTTATTTCC AAATAGCATT TCTTTATAGT
CTTGCCGCAT TGTTAGTAAT GCTAATTTTC TCTTGGAGTT ATTACAATCG TTATTGCCTT
GAACTGGCTC TAGAAAAGGG GTCAAGAACT GATCCATTAA CAGGTGTAGC TAATCGAAGA
CATTTTGATA GTTTGCTTAA ATCCGAGGTG AATCGAAACT CTAGATTTGG AAGCGCTTGT
GCTCTCATTA TACTAGATAT AGATTTTTTT AAGCGCATTA ATGATACATA CGGACACCCA
ACTGGAGATA GTGTTATTTG TTCCCTTGCG AATTTCTGCG TAACCCTCTC CCGGGAAACA
GATCTGGTGG CTCGACTAGG TGGAGAAGAA TTTGCAATAA TTCTCCCCGA TACAAACATT
AGTAGTGCAA AGAATCTAGG AGAACGAATC AGGTTACATG TTGAGAACCA ATCTTTAATA
AGTGAAACAG GAGAGAAAGT AATATGGACA ATTAGCTTGG GGATCTCCGC CTTACAAGAA
CACAAAATTA CTAAAAATAA TAATGAGTTT ATTGCTGAGC AATTAATTCA GCATGCAGAT
ACAGCTCTTT ACGAGGCTAA AAAAGGCGGA CGTAATAGAA CTGTTTTATA TGACAGTGAA
TAA
|
|---|
| Protein sequence | MMINSDNSTL LTFIEIIKFE ASEKYLIKKY FDYRICTTAI LLLLIPLGFA EGLFDHITTP
ELNGELLELR LYMFFLIIPA ILTFKAKSVK IATATIIVTV IFISFLSIKM AEILGEEAIY
TVTTVAIYPF LIFFILIGLS IYIQITALFS AFLFVIHYKL DAATNMDLQN IYFQIAFLYS
LAALLVMLIF SWSYYNRYCL ELALEKGSRT DPLTGVANRR HFDSLLKSEV NRNSRFGSAC
ALIILDIDFF KRINDTYGHP TGDSVICSLA NFCVTLSRET DLVARLGGEE FAIILPDTNI
SSAKNLGERI RLHVENQSLI SETGEKVIWT ISLGISALQE HKITKNNNEF IAEQLIQHAD
TALYEAKKGG RNRTVLYDSE
|
|---|
| |