| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3848 |
|---|
| Symbol | |
|---|
| ID | 4480058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4618877 |
|---|
| End bp | 4619962 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639728461 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_871472 |
|---|
| Protein GI | 117922280 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.918542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.711455 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTT TTGAAAAAAA TCATAAGGTT ACTTTTCTCA TTTTCGGAGC AGTTTTACTT
CTAGTTGGGT GTGAGCAATC CCAAATAGAT ACCAAAGAGA CAGTTTCAAG GCCTGTTAAA
CTCTTGCAAG TGGAGCAGAC CCCTAGTACA TCAACGTATC GATATCCAGG TAGCGTGTCA
TCGGTTAAAG AAGCCGTTTT GGCTTTCGAA GTACCTGGTA AAGTAATTAA ATTGCATGTA
AAAGAAGGTG ATTTTGTCAA ACAAGACACA GTATTAGCTG AAATTGATGA TCGTGATTAT
CAAGCACAAC TTGACAGTGC AAAGTCTGAT TTAATTGTTG CTAAGTCTGA TTTTCAAAGG
TATGAAAAGG CGTTAAAAGC AGATGCTGTT ACTCCTCAAG CATTCCAGCA AGCGAAAAGA
AATCTTGAAG TTGCACAAGC TGCCTTTAAT CAAGCAGATA AAGCTTTAAC AGAAACCAAA
CTAATAGCTC CATTTGCAGG GCGCGTAGTT ACAAGAGAAA TAGACCTCTT TGCAACAGTA
CATGCTAAGC AACCTATTAT GCAGTTGCAT AGCGAATCTG CGTATGAAAT GGTTGTAAGC
GTTCCAGAAT CGGATTGGGC GCAAGGAGAA AGAGTCAACT CCGCGGCTGA CATAAAGCTT
GATAATCAGT TATTTGTTAC CCTAACAGCA TTTCCCGATA AAAGGTTCGA GGGCAAAATA
ACTGAATTCT CCGGCCAAGC AGACGCCGCA ACCAGAACTT ATAAAGTAAA AGTAGCTTTT
TCAGTACCAG ACAAAACGCC TATCAGCTCA GGCATGACAG GGCATGCTAT TTATTTGTCA
TCTAATGAGT CAACAAACAT TCTTTCAATC CCATTAGATG CAATTGTGGG AAATAGTGAT
AATTCGGCCT TTGTATGGCT ATATGACCCC ATAAATGGAC AAGTTACCAA AAAAAGTATA
ACCATCGGAA ATATCACTGA GCAAACTGTC AACGTTCTTT CAGGTTTAAA AGTTGGTGAT
GTGATTGCTG TATCCGGTGT TCATAGCCTT TATGACGGCT ATCCTGTTTA TCCAATGAAG
GATTAA
|
|---|
| Protein sequence | MSIFEKNHKV TFLIFGAVLL LVGCEQSQID TKETVSRPVK LLQVEQTPST STYRYPGSVS
SVKEAVLAFE VPGKVIKLHV KEGDFVKQDT VLAEIDDRDY QAQLDSAKSD LIVAKSDFQR
YEKALKADAV TPQAFQQAKR NLEVAQAAFN QADKALTETK LIAPFAGRVV TREIDLFATV
HAKQPIMQLH SESAYEMVVS VPESDWAQGE RVNSAADIKL DNQLFVTLTA FPDKRFEGKI
TEFSGQADAA TRTYKVKVAF SVPDKTPISS GMTGHAIYLS SNESTNILSI PLDAIVGNSD
NSAFVWLYDP INGQVTKKSI TIGNITEQTV NVLSGLKVGD VIAVSGVHSL YDGYPVYPMK
D
|
|---|
| |