Gene Shewana3_3812 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3812 
Symbol 
ID4480022 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4577593 
End bp4579695 
Gene Length2103 bp 
Protein Length700 aa 
Translation table11 
GC content52% 
IMG OID639728425 
Productbifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 
Protein accessionYP_871436 
Protein GI117922244 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0497071 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTATCTGT TTGAAGGTCT AAAGGAGTCT GCTTCCGGTT ACTTAGAACC TGAACAGGTA 
GAATTGCTCA AGCAGGCGTA CCAAGTTGCG CGTGATGCCC ATGAAGGGCA AATGCGCACC
AGCGGCGAAC CTTATATTAC CCATCCGGTT GCGGTTGCCC GCATCCTCGC CGAGATGCGT
CTCGATCACG AGACGCTGAT GGCTGCTTTG CTGCACGACA CCATCGAAGA TACCCATGTC
ACCAAAGAGG ACTTGGCCGA ACAATTTGGC GAAGCCGTGG CAGAGTTGGT TGAAGGGGTG
TCTAAGCTCG ACAAGCTGAA ATTTCGCGAT AAAAAAGAAG CCCAAGCGGA AAACTTTCGC
AAAATGATGA TGGCAATGAC GCAGGATATC CGCGTTATTC TCATCAAGCT TGCCGACCGT
ACCCACAACA TGCGTACCTT AGGTGCACTG CGCCCCGATA AACGCCGCCG CATTGCCCGC
GAAACCTTAG AGATTTACGC GCCGATTGCC AACCGACTCG GTATTCACAA TATCAAGACG
GAGTTAGAGG ATTTAGGCTT CCAAGCCTAT TATCCGATGC GCTATCGGGT GTTAAAGGAA
GTGGTCAAAG CTGCCCGTGG TAACCGTAAA GAACTCATTC AAGGTATTGA AGCTGCGGTA
TTAACTCGCC TAAACGATGC GGGCATTAAA GGCAAAGTGA AAGGTCGCGA GAAAAACCTC
TACTCCATCT ATAACAAGAT GCAGAGCAAG GAACTCCAGT TCCAAGAGGT GATGGATATC
TACGCCTTTC GCGTCATCGT CGACTCCATC GATACTTGCT ACCGCGTCCT CGGTGCTATG
CACGGCCTGT ATAAACCGCG TCCGGGTCGC TTTAAAGATT ATATCGCCAT CCCAAAAGCC
AACGGTTATC AGTCGCTACA TACCTCGTTA TTCGGCCCAC ACGGCGTGCC CGTCGAGATC
CAAATTCGTA CCGAAGATAT GGATCAAATG GCCGACAAAG GGGTTGCGGC CCACTGGGCT
TACAAAGGCG GTGCCGATGG TCAAGGCACT ACCACGCAAG TGCGTGCCCG CAAGTGGATG
CAAAGCTTGC TGGAACTGCA ACAGAGCGCC AGCACCTCCT TCGAATTCGT GGAAAACGTT
AAAACCGAAC TCTTCCCCGA AGAGATTTAC GTCTTTACCC CCGAAGGTCG CATTTTAGAA
TTACCGGTTA ACGCCACCGC CGTCGACTTT GCCTATGAAG TCCACACCGA TGTGGGCAAT
ACCTGTGTCG GCGCCCGCGT TAACCGCCAA GCTTATCCGT TAAGCCAGCC ATTAATCTCC
GGCCAAACCG TTGAGATCAT TACCGCCAAA GGCGCGCGTC CGAATGCCGC TTGGCTTAAC
TTTGTGGTGA CGGGTAAAGC CCGCGCCAAA ATCCGCCAAG TGCTTAAGAG CCTAAAAGCA
GACGATGCTA TCGCCCTTGG CCGCCGTTTG CTAAACCATG CGCTGGGTAA AACCAAGCTC
GATAGTATTC CTGCCGAGCA AATTGATAAA GTCGTGCGCG ATACCAAGCA CGCCAATTTA
AATTCCTTAC TCGCCGACAT CGGTCTTGGC AATGCCATGA GCATAGTCAT CGCCCAACGT
TTGATTGGCG ATAATTTAGA GAATCAAGAG AGCCGCGATT CTCACCTGAT GCCAATCCGT
GGCGCCGAAG GTATGTTAGT GACCTTCGCC AACTGTTGCC GCCCGATCCC AGGTGATGCG
GTGATAGCCC ACGTGAGCCA AGGCAAAGGC TTAGTCGTCC ACATGGAAAA CTGCGCTAAC
ATTCGCGGTT ACCAAGGCGA GCCAGATAAA TATATTCCCG TACAGTGGGA CAATGTCGAA
GGCGTCGAAT ATCAAGCCAA TCTGCGGGTG GAAATTGTTA ACCACCAAGG CGCGCTGGCG
AAGATCACCT CGATTATCGC CGCCGAAGGT TCGAACATTC ACAACCTTAG CACCGAAGAG
CGCGATGGCC GCGTTTACTT GATTAACCTG CGGATTTCGG TGAAGGACAG GATCCATTTA
GCTAACGTGA TGCGCCGTAT CCGGGTACTG CCCGAGGTGT TACGTACATC CCGTAATCGT
TGA
 
Protein sequence
MYLFEGLKES ASGYLEPEQV ELLKQAYQVA RDAHEGQMRT SGEPYITHPV AVARILAEMR 
LDHETLMAAL LHDTIEDTHV TKEDLAEQFG EAVAELVEGV SKLDKLKFRD KKEAQAENFR
KMMMAMTQDI RVILIKLADR THNMRTLGAL RPDKRRRIAR ETLEIYAPIA NRLGIHNIKT
ELEDLGFQAY YPMRYRVLKE VVKAARGNRK ELIQGIEAAV LTRLNDAGIK GKVKGREKNL
YSIYNKMQSK ELQFQEVMDI YAFRVIVDSI DTCYRVLGAM HGLYKPRPGR FKDYIAIPKA
NGYQSLHTSL FGPHGVPVEI QIRTEDMDQM ADKGVAAHWA YKGGADGQGT TTQVRARKWM
QSLLELQQSA STSFEFVENV KTELFPEEIY VFTPEGRILE LPVNATAVDF AYEVHTDVGN
TCVGARVNRQ AYPLSQPLIS GQTVEIITAK GARPNAAWLN FVVTGKARAK IRQVLKSLKA
DDAIALGRRL LNHALGKTKL DSIPAEQIDK VVRDTKHANL NSLLADIGLG NAMSIVIAQR
LIGDNLENQE SRDSHLMPIR GAEGMLVTFA NCCRPIPGDA VIAHVSQGKG LVVHMENCAN
IRGYQGEPDK YIPVQWDNVE GVEYQANLRV EIVNHQGALA KITSIIAAEG SNIHNLSTEE
RDGRVYLINL RISVKDRIHL ANVMRRIRVL PEVLRTSRNR