| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3679 |
|---|
| Symbol | |
|---|
| ID | 4476278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4418359 |
|---|
| End bp | 4419111 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639728284 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_871304 |
|---|
| Protein GI | 117922112 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3248] Nucleoside-binding outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0284056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CATGCCTATG TCTAGCATTA ATGCTTTCAC CTCAAGCATT TGCTGGTGAC
TTAGTACAGT GGTGGGATTT CAGTGCAACC GCCCTTTATG GCGAAGACTA CGACTTGGCT
CCTTCGGACA AGCAAACGAC AGTCACACTC GAAACCGCTG GTGCATGGAA ATACGGTGAT
TGGTTTGCCT TCCAAGATTT TATCTACTTC AAAGGCGACC ACACGGGCAT GGATAGCACC
ACCTACGGAG AGATTTCACC TCGCTTTAGC GCGAGCAAAA TCCTCGGCGA AAAAATTGCG
TTCGGCCCTA TTACCGATCT TTCATTAGCC CTTACCTACG AAGAAGGTGA AGGCCCTGTG
CATAGCTTGC TCTATGGCTT AGGGGTCGAT GTTGCCGTAC CTTACTTTAC CTACCTTAAC
TTCAACACTT ATCGTCGCGA TGCAATGAGC TCAGGCAATA TCAGTGATGG CTGGCAGTTC
ACCCCAGTCT TCAGAATTGA TATCCCTGTA GGTTCGGCCA ATATCGTGCT CGATGGCTTT
ATCGATTGGG TATTTGCCAC GGATAACAGT GGCTACGAAG AAAACTTCCA CTTCAACCCG
CAGCTGAAAT ACGATTTGGG TAAGAGCCTA TTTGGTGACC ATAAGGCAAA TAAATTGCTT
GTCGGTATCG AGTACGATCT GTGGACCAAC AAATACGGCG TGAAAGGTGT CGACCAAGAC
ACTTATTCTG TGATTGCTCA GTACCACTTC TAA
|
|---|
| Protein sequence | MKKTCLCLAL MLSPQAFAGD LVQWWDFSAT ALYGEDYDLA PSDKQTTVTL ETAGAWKYGD
WFAFQDFIYF KGDHTGMDST TYGEISPRFS ASKILGEKIA FGPITDLSLA LTYEEGEGPV
HSLLYGLGVD VAVPYFTYLN FNTYRRDAMS SGNISDGWQF TPVFRIDIPV GSANIVLDGF
IDWVFATDNS GYEENFHFNP QLKYDLGKSL FGDHKANKLL VGIEYDLWTN KYGVKGVDQD
TYSVIAQYHF
|
|---|
| |