| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3668 |
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| Symbol | |
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| ID | 4476267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 4404484 |
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| End bp | 4406394 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639728273 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_871293 |
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| Protein GI | 117922101 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCA CTCGAATGTT AACTACAAAA TTAACCAGTT TTTGGTTAAT GTCCTTGGCC
GCTATCGCCT TTGTCTTTTT ACTCAGCGCC ATGATGAGCT TTGTGCAGTT GACCTATAAG
TTTCAACAGC AAAAAGTGAC TGAGCTGGAA TCCCTTTTGA TTGAACATTA CCAAACTCAG
CCCGATTGGG AGTTAGAGTC TTGGTTGCCA CCTATGCTGC TGGCGTACAA CGCCGTCGAA
TTCCGTTTGA CCATGAAGAG CGAAGTGCTC TTCGCCTATC AGGGCAACGT GCAGACGCAA
AATGCCATGG TCTATACCCA TTTGCTCGAT CCCCAGTCGG GATTGAATAT GACCCTCACG
CTGCCACAGC CCTTCGAGCA TTACAGCGTC AGTTGGTATG AACTGCTTAT TTTAGGTGTA
GGCTTGCTGG CGGTGATTGC ATTGGTGCGT TTTGGCCATG TGTGGTTTTC GCAGCAGTTA
GATGGGATTG AAGAGCTTGC CCAGCGTAGC CGATTGATTT TGCAAGGCAA ACACGAGCAA
GCCCTCGCAA CGCCGGGCAA TGGTAAACCT AGGCTCATCA ACCGAGCCTT AACTAAGCTG
CTCGAAGAGT TGCAGGACGC CCATAAAGAG CGCGGCCGTT TCGATAAGTT TATTCGCTCC
AACACTTTTT TAGATGCGCA AACCCGTATC GGTAATCGGT TGTTTTTAAA CAACCGCCTC
GACGCCTTGA GTCATGACCA AGGCATGGTG GCCCACGGGG TGATTTATCT GTTGGAGATG
GACGACCTCG ATTTATTGCA ACAGGCCAAA GGTGAGAGTG CGGTGAAGGA GTTGCTCCAT
GCGACAGTTA ACAGCATTAA TTCTATTTTA CAGACCTTAC CCAACAGTAT CTTTGCACGC
CGCTCCCATA ATCAATTTGC GATTGTCGTG CCCCATGTGT CTTTGATTGA GGCCGATCAG
CTTGCCAGTA AATTACTCAA AGTCTGTTTG AGCCAACCTT TGCCCGATGA TGTAGAGAAT
CAAGACAACT TTTATCATTT GGGCTGCGCT TACTTTACCG CCGGGGATAA TGTTAATCAG
TTGCTCGATG AGGCCGATAT GGCATTACGC GCCGCGCAAT TACAAGGTAA CAGTAATTGG
TTTATGTACG ACAAGGGCGC GATTGATGAG GAGTTTGCTA AAGGCTCGGT GCGTTGGCGT
AGCTTCCTAG AGAATGCCTT GGTTCAGCGG CGTTTTTATC CCTTTAGTCA GCCAGTGATG
GATTCCGACG GCGTTGAGCA TCACAAGGAA ATCTTTACCC GGGCGCGGGA TAATCAGGGC
GCGTTAGTGC GGGCGACGCT CTTTATTCCT ATGGCAAACA AATGCGGGCT GATGCCCCAG
ATTGAGCGGC AGATGATTGA GCGAGTATTA GGTTTGTTGT CGCAAGAAAA ACATAAAAAT
CAAGTCTATA GTGTGAACCT GAGCCTAGAT ACCTTAATGA GCCGCGCCTT TACCCAGTGG
CTTAAAACCA CTCTGCTCGA ATATCGCCAC CTGACGCCAC AACTGATTTT TGAGGTGTCC
GAGGATATCG TTATCCTACA CCAGGATAAG CTTAAGCCTA AGCTGGATAT GATCCGTAAG
ATGGGCGCGC GACTGTGTGT CGACCATGTG GGTCAGCAGG TGGTGGGTAC TTACTATATT
CGCGAGTGCC ATTTCGACAT GATTAAACTG CATAGGTCGA TTGTGCGCCA CATTCATTTG
CGCCCAGAAA ATCAATTGTT TATCCGTAGT CTTATCGGTG GCTTATATCG CACCGAAGTG
CAAGTCTGTG CCGAGGGAAT TGAAGTGTTT GAAGAATGGC AAACCCTACA AATCCTCGGT
GTGGGTATGG CGCAGGGCAT GTATTTTAGT GAGCCGATTG AGGTGCAATA G
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| Protein sequence | MKFTRMLTTK LTSFWLMSLA AIAFVFLLSA MMSFVQLTYK FQQQKVTELE SLLIEHYQTQ
PDWELESWLP PMLLAYNAVE FRLTMKSEVL FAYQGNVQTQ NAMVYTHLLD PQSGLNMTLT
LPQPFEHYSV SWYELLILGV GLLAVIALVR FGHVWFSQQL DGIEELAQRS RLILQGKHEQ
ALATPGNGKP RLINRALTKL LEELQDAHKE RGRFDKFIRS NTFLDAQTRI GNRLFLNNRL
DALSHDQGMV AHGVIYLLEM DDLDLLQQAK GESAVKELLH ATVNSINSIL QTLPNSIFAR
RSHNQFAIVV PHVSLIEADQ LASKLLKVCL SQPLPDDVEN QDNFYHLGCA YFTAGDNVNQ
LLDEADMALR AAQLQGNSNW FMYDKGAIDE EFAKGSVRWR SFLENALVQR RFYPFSQPVM
DSDGVEHHKE IFTRARDNQG ALVRATLFIP MANKCGLMPQ IERQMIERVL GLLSQEKHKN
QVYSVNLSLD TLMSRAFTQW LKTTLLEYRH LTPQLIFEVS EDIVILHQDK LKPKLDMIRK
MGARLCVDHV GQQVVGTYYI RECHFDMIKL HRSIVRHIHL RPENQLFIRS LIGGLYRTEV
QVCAEGIEVF EEWQTLQILG VGMAQGMYFS EPIEVQ
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