| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3441 |
|---|
| Symbol | |
|---|
| ID | 4476784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4123590 |
|---|
| End bp | 4124747 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639728050 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_871070 |
|---|
| Protein GI | 117921878 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2039] Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00415893 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.25947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAGC CAAGCCTCGT TTTTATCCTC GCCAGCACAG TGGCGCAAAC CGCAGGTGCA
GTACAACTCC TAGGAGATGT GGAAGTTTCC CGCATTCCCA CTGCAGAAAA AACCATGGCA
GAAGTGGTCT ACCGCTATCA AGCCTTGGAC GAAGGCTTGG CGACTCAGCT TTCCGCACAG
AAGAATGAAC GCGATGCAAC CCAACTTGCC GCTCGTCAGG GGCATAGACT GTGGCAACAG
GCGGTGCGTG ATGTGCAGTC AGGGCACTTT GACGACAGAT CCCTCTACTG GGCTCGGCTC
TCAATGTTAA ATAGCATCAA GAGCAATCGC GCCAATTTCA AAATGGCCGA TTGGCAACAG
AATATTTTAG CCAGCGCAGT CGAAAAGGCA TCTCGCGGTT TTAGCGATAT CCAATACGGC
GACGATGTGC AGATAAAAAT CTTCCTGACG GGATTCGACC CTTTCTTCCT CGATAAAGAC
ATCAGCCAGA GCAATCCCTC GGGCTTGGTC GCCCTTGCCC TCGATGGTTT TAGATTTGAT
ATCAACGGCA AAAAAGCCCA AATCGAAACC GCGATGATCC CAGTGCGCTT CGAGGATTTT
GATCAAGGCA TTATCGAGTC GCTACTTAGC CCGATTTACC GCGATCCTAA AACCCAGTTT
GTCTTTACCG TCAGCATGGG CCGCAGTGAC TTTGATATTG AACGCTTCCC CGGCCGTAAC
CGTAGCGCCG CCGCGCCGGA TAACCAAAAT CTGTACACAG GCGGAAGCAA AACCGCGCCT
GTCGCCCCCA AACTCAATGG TAAAGACTTT ATCGGCCCAG AGTTTGTTGA GTTTTCACTG
CCCGTTGCCG CCATGCAGGT CAAAGACGGC CAATGGAAAG TCAACGACAA CCATACAGTG
ACCACACTAG CGCGCGGTGA ATTTAATGCC AGCTCCCTAA GCGAGCTGCA AAATGAAACC
TCGGTCGAAG GTTCTGGTGG TGGCTATCTC TCAAACGAGA TTTCTTATCG CGCCATTGTG
TTACAGCAAA AGTTCAACAG CCCAGCCAAG GTCGGCCATA TCCACACCCC AAGGGTGAAG
GGCTACGACA ACGCCACCGA ACAAGCGATT GTCGAGCAAG TGCGTACTAT GGTGATGCAG
GCCACAGCGA GCCTGTAA
|
|---|
| Protein sequence | MLKPSLVFIL ASTVAQTAGA VQLLGDVEVS RIPTAEKTMA EVVYRYQALD EGLATQLSAQ
KNERDATQLA ARQGHRLWQQ AVRDVQSGHF DDRSLYWARL SMLNSIKSNR ANFKMADWQQ
NILASAVEKA SRGFSDIQYG DDVQIKIFLT GFDPFFLDKD ISQSNPSGLV ALALDGFRFD
INGKKAQIET AMIPVRFEDF DQGIIESLLS PIYRDPKTQF VFTVSMGRSD FDIERFPGRN
RSAAAPDNQN LYTGGSKTAP VAPKLNGKDF IGPEFVEFSL PVAAMQVKDG QWKVNDNHTV
TTLARGEFNA SSLSELQNET SVEGSGGGYL SNEISYRAIV LQQKFNSPAK VGHIHTPRVK
GYDNATEQAI VEQVRTMVMQ ATASL
|
|---|
| |