| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3435 |
|---|
| Symbol | |
|---|
| ID | 4476778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4111011 |
|---|
| End bp | 4111898 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639728044 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_871064 |
|---|
| Protein GI | 117921872 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0107817 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCC CAATCAAGAC CTTGCAATGT TTTCTGACCT TAGTCGAAAC GGAAAACTTC
ACCCGTGCCG CGGAAAAATG CTTTATCACC CAGCCCACGC TGAGCAAGAT CATCCAAAGG
CTCGAAGAGA GTTTAGGCGA GACGCTGCTT ATCCGTAACA ATCAGAAAGT CGAGCTGACC
CAAGCAGGGC AGCTGTTTGA ACACAGCGCG CGGGAAATCC TCGGGCAATG GCATAGATTG
CAGGAGGACA TGAGCAACTT AAGCGGACTT AAAACAGGAC GGTTAAGATT AGGCGTCTGC
CCTATGATGA GCAGTCTAAT TATCGGGCTA CTGACCAGTT ACCGAAAACG TTATCCCGGC
GTTGAGCTGC AAATGTATGA ATACGGCGGA TTTGGTTGTG AACAGGCGCT GCTGAATAAC
AGCTTAGACA TCGCCTTTAC CGCACTGCCA ACCACCCATG AGACCGAGCT GGTGAATCAA
CCGCTCACCA AGTATCCCCT GCTCGCTTGT TTGCCCGATG GGCATCCGCT CGCCAGTCAA
TCTCACCTCA GCTGGCAGGA TTTTGAGCCC TATCCCTTTA TTCTCTATAA CGAAGATTTT
TCCTTGGCGA AGCTAATAAA TCGCCTGAGT CGTAAGGCGG GAGTGCAACT CAATATCGCG
TTTCGAAGCG GCCAATGGGA CTTTCTCGCC GCTATGGTCG AGGCCGATAT GGGCCTAGCG
ATTTTACCCG AACCGATTTG CCAAAAACTC AGCACCAGCA AGTTAGTGTT TAGACCTATG
CAACCGGCGA TGACCTGGGA TTTAGCCCTC ATTTGGCGGC AAAATCTACC TTTAACCCCT
GCGGCCAATG CGTTACTGGA ACTGAGTAAA CAGAAAGCAC TGCGTTAA
|
|---|
| Protein sequence | MNIPIKTLQC FLTLVETENF TRAAEKCFIT QPTLSKIIQR LEESLGETLL IRNNQKVELT
QAGQLFEHSA REILGQWHRL QEDMSNLSGL KTGRLRLGVC PMMSSLIIGL LTSYRKRYPG
VELQMYEYGG FGCEQALLNN SLDIAFTALP TTHETELVNQ PLTKYPLLAC LPDGHPLASQ
SHLSWQDFEP YPFILYNEDF SLAKLINRLS RKAGVQLNIA FRSGQWDFLA AMVEADMGLA
ILPEPICQKL STSKLVFRPM QPAMTWDLAL IWRQNLPLTP AANALLELSK QKALR
|
|---|
| |