Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3419 |
Symbol | |
ID | 4476762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 4089662 |
End bp | 4094965 |
Gene Length | 5304 bp |
Protein Length | 1767 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639728028 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_871048 |
Protein GI | 117921856 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATAAAA GTAAACTTCG TACCTTCCGC AGCAAAATTC TATCCCATAT TGCGCTGCCT TTAATTCTTA TCATGACGGC CGTTTACGGC ATTAATGCTT GGTTTAATTA TCTTTCTGCC GAGCGAAAGC TATACGATTC CTTAGCCCAG GAGTCGAATC ATTCCGCCTA TCGCCTACAG TTGCTAATCG AACATGCGCA GGCCAATACG CAAGGTGTTG CCGATTTTAT TGGGTTTATC TCCAATAAGG AGGGCATTAA TGATAGTGAG AAAATCAAAC GGGTACTCAC TAATCGCATC GAACGCAATC CCGATTTTTA TGGCTCAGCC GTTGCGTTTA AACCTTATAC CTTCCCCGAT AAAAAACTCT TTTCCCCCTA TGTTTACCGC GATGGCAACA ACTTCCATTA TCTAGATATT GGCGCCGAGG GTTATGACTA TACCGATGGC TCCTGGGATT GGTGGTCAAA GGCCATTAAT CAACCCGGAG GCTATTGGTC TAAGGCTTAT TTTGATGAGG GCGCGGGAAA CACTTTGATG GTGACTTATT CGGTGCCTTT TGGCCCTGAA AATGATTACT TTGGGGTGGC GACCGTCGAT TTGGCGCTCG ATAAATTGCC TGAACAACTT GGTGTGCAGC CAAGCCAATT AGTGGTACTC GATGATCAAG GGCGGCTGAT CTTCCACAGC GATAAAGAGA AAGTGCTCGC CGTGACCTCC GCCGAATGGC TCGATAGAAA TACCCGTCGA AACAGTGACT TTTGGACATT ATTAGATAAG GGGTTAAACG GACAGGCGCG CTTTATCGAT GATAAGAGCA CTGTGTATCT CGCCAGTGTT GCCTCAGTCG CTAAGCTCAA ATGGCGCGTC ATTGTCATGG TGCCCGAACA TCAGCTGTTT GCAACGCTGC TGGATGATGT GGCGTCCGTG GTGCTTAACC TTAGTTTATT AACTCTATTG TTATTACTCA CTTGCTACAT CGCCGCTAAA CGTTTGACTC GGCCGCTTGA GGCGCTGGAG TCGGGCATTT TGGCCTTCGG TCAGGGTAAA GCCCAGCAAT TAGCGATCCC CAAAGGTGCG GTGAGTGAGA TAGTCACCTT AAGCAGCACC TTTAACCAGA TGGCGGAACT CCTCGGCGAG CGTGAACAGG CGATTTTAGA CTCCCGCGGT AACCGTTTCG CGCGGCTGAT CGATGGCATG AGTGATAAGT CCTTCTATTG CTCGCTCGAC CCTTCAGGGC AGCTGGCGCA GGTGAGTGAG GGCGTCACTA AGGTCTTGGG CATGTCACCT GAGCTACTCA AACGTAAGTA TCAAAGACTG TTTACCGCCA ATCCATTAAA TGAAAAAAAC TGGGAATACA CGGATTTAGC CCTGAAGGGG GAGAACGTTC CTTCCCATCA AGTCGAGCTG CTCGACGCGA GTGGCCACCC ACGTATGCTC GACCTCTTTA TGCTGCCCTT GGTTTCGGAT ACGGGCGAGC TGATGTCGGT GGAGATGTTA TTCACCGATG TGACCGAACA GTTCTCCGCT GCCACTTGGT CTAATGCCGT ACTCGAAGCG GCGCCAGAGG CGATGCTGAT CGTCGAGCAG ATGGGCTCAA TTGTATTCAC TAATACCCGC TGCCAAATTC TCTTTGGTTA CGATGCCAAC AGCATGTTAG GGCTACAGGT GGAGTCACTC TTGCCTGAAG CCATGCGCAG CAACCATGCC CGCGACCGCC TGCAATTTTT GCGTGAAGGC CGCGATCGCC CCATGGCCAA TGCGCGCCAT GTGCGGGCGC TTAAAGCCGA TGGCGGGGAG TTTGTCGCCG AAATCGCCTT GAGTATTTTA CCTGCCGATC ATGAAGGTCG CAGACAAGTG GCGGCATCGA TTCGGGATAT GACCCAGAAA TTAGCCGTAG AGCAAAAAAT CCGTGACAGT GAACTAAGGT TCCGCGGCCT AGTGACCAAT ATTCCTGGCG CCGTCTATCG TACGCGCATC GGCGATGTCT GGGTGATGGA ATATGTCAGT GACAACATTG CCGATATTAC GGGGTTTGCG GCGAGCCAGT TTATTGAAAA CCGTCAACGC ACCTTTGCCT CGCTGATCTT GGAAGAAGAT CGTGAGCTAT GCCATCAACA TATCGATAGG GCGCTGGCGC AGCAGGAAAC CTTTGAGGTG GAATACCGTA TTCGCCACCG TGACGGCAGC ATTCGCTGGG TGCATGAAAA GGGCAAGGCG AGTTATACCG AAGAAGGATT CCCACTGTGG TTTGACGGCA GTATTGACGA TATCACCGAG AGCAAACTGG CCATGGTTGA GCTTGAGGCG TCGCGCCTGC AACTCACCAA TATTACCGAA TCTATCCCTT GTACTGTGTA TCAGTTGCGC TGGGTTTCTC CTGCGGATCA TACCTTTACT TTCCTCTCCG GCGCGGCATT CCATATGCTG GGCTTACACC GCGAAGATTT ACTGAAAGAC TTTAATATCA TTGCCGAGCG GATTTTTGAT GAGGAACGCC CCGAGGTGGT GCGTGCCTTA GCGGGTAAGA GTGAGGACAA GTTGCAATGG GTGCGTGAGT TCCGTTATCG CCATCCTAAC GGCAGTATTC GCTGGATGGA GGCGGGAGCG AGCGGTCACT ACAACGATGA TGGCGCCATT ATTTGGAATG GCTACGTGAT GGATATTACC GAGCGTAAAG CCATTGAAGA AGAGTTGGCA GTTAGCGAGG CGCACTTTAA GGCGCTATTT GATGGCTCGA CCATTGGCAT TGTGAACGTC GATGCCAAAG GCGTGATCCT CGACTGTAAC GACCAATATT GCGAAGACAT GGGCCAGACC CGTGAGTCAC TCTGCGGTGT GCCAATTTTC GATGTCTTGA GCCTGCAGGA TAAAGAAACC GCTAAGGCTC AGTTTAGAGA ATTGGCCGAA GGTAAAGTCG ACCACTATCG CGGTGAACGT AGCTTTATTC GCCCCAATGG TGAGCCACTG TGGATGACGG TCAATGTGTC GGCACTGTTT GATAGCCAGA AGCAGTTCGA ATCGGCCGTG GTCAGTATGG TCGATATGAC AGAGCTGAAA CTCTTATCTG ACGAACTGTT AGTGGCGAAA GAGGAGGCGG ATGCGGCGAG TAAGGCTAAG GGCGATTTCC TCGCGAATAT GTCCCATGAA ATCCGCACGC CGATGAATGC CATTATCGGT ATGTCGCAAC TTTGTTTGCA GACAGCGCTG GATAAGAAGC AGAAGAACTA TGTGGAGAAA ATTGAGCGCG CCTCAAAATC CTTACTCTCC ATCATTAACG ACATCCTCGA CTTCTCTAAA ATTGAAGCCG GCAAGTTAGA TATCGAATCT GTGCCCTTCC AGCTCGATAC TATGCTCGAA GATCTCAGCG ATATGTTCTC CGAGAAGGCG GCCCATAAAC AGCTTGAACT GCTGTTTGCG GTGGCGCCCA ATGTGCCTAG GCACTTATTT GGTGACTCGC TGCGTTTAGG GCAAGTGCTG ATCAACTTGA TGAACAACGC GATTAAGTTT ACCGAGCGCG GTGAAGTCTT GTTATCGCTC AACTTGGTTG AGCAGCAAAA TGACGATGTG GTGCTGCGCT TTAGTGTGCG CGACAGCGGT ATTGGTTTAA CCGCAGATCA GCAGGCCAAA CTGTTTAAAT CCTTCAGTCA GGCCGATACC TCTACAACAC GCAAGTACGG CGGTACGGGC TTAGGGTTGG CGATTTGTAA ACAGCTCGTC GAACTGATGG GCGGCACCAT TGGGGTTGAA AGTCAGTTCG GCCACGGCAG TACCTTCTAT TTTACCGTTA AGTTGCAGAT TTCCAGCGGT CAAAAGCTAA CGGTCGCCCA AGAGCTTGAA GGCATGCCGA TTCTGGTTGC CGATGACAAT GCCACCGCCC GCGACATTAT GCGCACCACC TTAGAAAGCA TGGGCTTTAG GGTGGATACT GTGCGCTCCG GCGAAGAGGC TGTGACCCGC TGTATTCAGC AGGAATATGC CGTTGCCTTA ATCGACTGGA AGATGCCGAA CCTCGATGGC ATAGAAACGG CTAAACAAAT CAAGCAACAG GCGAAGAAGG CACCGCGGAT CTTGATGGTG TCGGCCCATG CAAACCAAGA CTTCTTAAGC CAAATTGAAG AACTTGGCTT GGCCGGATAT ATCAGTAAAC CCATTAGTGC ATCTAGGTTG CTCGACGGCA TTATAAATTC CCTCGGTCGG GCGGGAGTTC TCCCCGTGAG ACGCCAGAGC GAGAGCATCG ATCCTAAACT GTTATTGCCG CTTAAGGGTA AGCGCATCCT CTTGGTTGAA GACAATGAGA TGAACCTTGA GGTGGCCACC GAGTTTTTAG AGCAGGTGGG GATTATCTTA TCCATTGCCA CTAACGGCCA GATAGCGCTC GATAAGCTGG AGCAGCAGAG CTTCGATCTG GTGTTGATGG ACTGCCAAAT GCCAGTGATG GACGGTTATC AGGCCACGCA GGCTCTTAGA AAGCGGCCCG AACTCACCGA GCTGCCCGTG GTCGCGATGA CAGCAAATGC GATGGCTGGC GATAAGGAAA TGTGTTTAAG AGCGGGGATG AACGACCATA TCGCTAAGCC GATTGAGGTC AACCTACTGT ATCAAACCCT GTTGAAATAC TTAGGTGGCA GCGCGTCGCT GGTCGATAAC ACAGAACCGA GTCAACTGGT TGATATTCCA GTTAAACCGA TCAACTTAGA TTCTGAATCT GTGGTGAAAT GGCCCGAGCA TCCTGAGCTG GATATCGATA GGGGCTTACA ATTAGTTCAA AACTCTACCC GTTTGTATCA AAGGAGCTTC GATCGTTTCG TTACCAGTCA GCGTAATGTG GTGGATCTCA TCAATAAAGC GCTCGCCAAT GACAAACGTG ACGATGCCGT GCGGATGGCG CATACCTTGA AGGGGCTCGC GGGTAACTTA AGCTCTAGCA AGCTGGTGGA ATTAGCCCGC CAACTAGAGT TGCACTTAAG TGAGAAGAGC GAATACCAAA CTGAGTTAGA CCAAATCCAA GCGCTAGTGG CGTCGATTTG TGATGCCATT GAGCGGGTCA AGCCGCAGTT TGAGGAGTCG ACTACATCGA CGAGCGAACA ACTCTCGCCA GAGGCGCTAG TCACCGCCTT AAAACAGCTG CGACAAAGCC TAGAGGATGC TGACTCAGAT GCGGTGGCGC AAATCGATGC GTTAAAACCT CAGGTGAGTA GCAAGTTATG GCTGCAGCTC AGCCCAGCCC TGACTATGAT TAATCAGTAT CAGTTTGATG AAGCAGTGGA TTTGATTGAT GAAGTGCTTG CGGAATTAAC CTAA
|
Protein sequence | MDKSKLRTFR SKILSHIALP LILIMTAVYG INAWFNYLSA ERKLYDSLAQ ESNHSAYRLQ LLIEHAQANT QGVADFIGFI SNKEGINDSE KIKRVLTNRI ERNPDFYGSA VAFKPYTFPD KKLFSPYVYR DGNNFHYLDI GAEGYDYTDG SWDWWSKAIN QPGGYWSKAY FDEGAGNTLM VTYSVPFGPE NDYFGVATVD LALDKLPEQL GVQPSQLVVL DDQGRLIFHS DKEKVLAVTS AEWLDRNTRR NSDFWTLLDK GLNGQARFID DKSTVYLASV ASVAKLKWRV IVMVPEHQLF ATLLDDVASV VLNLSLLTLL LLLTCYIAAK RLTRPLEALE SGILAFGQGK AQQLAIPKGA VSEIVTLSST FNQMAELLGE REQAILDSRG NRFARLIDGM SDKSFYCSLD PSGQLAQVSE GVTKVLGMSP ELLKRKYQRL FTANPLNEKN WEYTDLALKG ENVPSHQVEL LDASGHPRML DLFMLPLVSD TGELMSVEML FTDVTEQFSA ATWSNAVLEA APEAMLIVEQ MGSIVFTNTR CQILFGYDAN SMLGLQVESL LPEAMRSNHA RDRLQFLREG RDRPMANARH VRALKADGGE FVAEIALSIL PADHEGRRQV AASIRDMTQK LAVEQKIRDS ELRFRGLVTN IPGAVYRTRI GDVWVMEYVS DNIADITGFA ASQFIENRQR TFASLILEED RELCHQHIDR ALAQQETFEV EYRIRHRDGS IRWVHEKGKA SYTEEGFPLW FDGSIDDITE SKLAMVELEA SRLQLTNITE SIPCTVYQLR WVSPADHTFT FLSGAAFHML GLHREDLLKD FNIIAERIFD EERPEVVRAL AGKSEDKLQW VREFRYRHPN GSIRWMEAGA SGHYNDDGAI IWNGYVMDIT ERKAIEEELA VSEAHFKALF DGSTIGIVNV DAKGVILDCN DQYCEDMGQT RESLCGVPIF DVLSLQDKET AKAQFRELAE GKVDHYRGER SFIRPNGEPL WMTVNVSALF DSQKQFESAV VSMVDMTELK LLSDELLVAK EEADAASKAK GDFLANMSHE IRTPMNAIIG MSQLCLQTAL DKKQKNYVEK IERASKSLLS IINDILDFSK IEAGKLDIES VPFQLDTMLE DLSDMFSEKA AHKQLELLFA VAPNVPRHLF GDSLRLGQVL INLMNNAIKF TERGEVLLSL NLVEQQNDDV VLRFSVRDSG IGLTADQQAK LFKSFSQADT STTRKYGGTG LGLAICKQLV ELMGGTIGVE SQFGHGSTFY FTVKLQISSG QKLTVAQELE GMPILVADDN ATARDIMRTT LESMGFRVDT VRSGEEAVTR CIQQEYAVAL IDWKMPNLDG IETAKQIKQQ AKKAPRILMV SAHANQDFLS QIEELGLAGY ISKPISASRL LDGIINSLGR AGVLPVRRQS ESIDPKLLLP LKGKRILLVE DNEMNLEVAT EFLEQVGIIL SIATNGQIAL DKLEQQSFDL VLMDCQMPVM DGYQATQALR KRPELTELPV VAMTANAMAG DKEMCLRAGM NDHIAKPIEV NLLYQTLLKY LGGSASLVDN TEPSQLVDIP VKPINLDSES VVKWPEHPEL DIDRGLQLVQ NSTRLYQRSF DRFVTSQRNV VDLINKALAN DKRDDAVRMA HTLKGLAGNL SSSKLVELAR QLELHLSEKS EYQTELDQIQ ALVASICDAI ERVKPQFEES TTSTSEQLSP EALVTALKQL RQSLEDADSD AVAQIDALKP QVSSKLWLQL SPALTMINQY QFDEAVDLID EVLAELT
|
| |