| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3171 |
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| Symbol | |
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| ID | 4477768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3810680 |
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| End bp | 3811651 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639727778 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_870801 |
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| Protein GI | 117921609 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000261033 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAG AGATTAATCT AAAAAGCGAG ATTTCGGCAA CACAAACTGG CCTGAGATTG
GATCAAGCAC TGGCTGAGTT GTTCCCAGAT TACTCGCGCA CGCGCATCAA GGAATGGATC
CTATCTGATG CAGTCTATGT TGATGGCGTG ATAGTGAATA AGCCGCGCGA AAAGGTATTC
GAGCTGCAGC GCATTGAAAT TAATGCCACG CTCGAAGAAG AAGTGCATGC GGCCGCACAA
GCCATTGAGC TGGATATTGT CTACGAAGAC GATGATATCT TAGTGATCAA TAAACAAGCG
GGCTTAGTGG TTCACCCCGG TGCTGGCAAT GCCGATGGCA CTTTGATGAA CGCCCTGCTG
CACCATTGCC CGAATATCGA GCACGTTCCA CGTGCGGGTA TTGTGCATCG TCTGGATAAA
GACACCACAG GTTTGATGGT GGTAGCCAAA ACGGTTGAAG CGCAAACCCA TTTAGTGGCC
GCGCTGCAAG CCCGTGAAAT CACCCGTGAG TATGAGGCGA TTGTCCTCGG TACTATGACG
GCGGGCGGTA CAGTCGATGA GCCTATTGGT CGTCATCCGA CAAAACGTAC CCATATGGCG
GTGCATCATT CGGGTAAACC CGCAGTGACT CACTACCGTG TGGCGGAAAA ATTCCGTAAT
CACACCCGTT TAAGATTGCG TTTAGAATCG GGCCGTACTC ACCAAATCCG TGTGCATATG
GCATATATTG GCCATGTGTT GGTGGGCGAT CCTGTTTATG GCGGCCGTCC AAAACCACCC
AAGGCAGCAA GTCCTGAGTT TTTTGAGATC CTGAAAAACT TTAAACGCCA AGCATTGCAT
GCGGTGCGTT TGGAGTTAGC GCATCCTGTG ACTTGTGAAA TCATGAGCTG GACCGCGCCT
ATTCCAGAAG ACATGGTGAT TCTGACCAAA GCGCTGCGTC AAGACACCTT AGAACACCCA
GTCGAGTACT AG
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| Protein sequence | MTQEINLKSE ISATQTGLRL DQALAELFPD YSRTRIKEWI LSDAVYVDGV IVNKPREKVF
ELQRIEINAT LEEEVHAAAQ AIELDIVYED DDILVINKQA GLVVHPGAGN ADGTLMNALL
HHCPNIEHVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVA ALQAREITRE YEAIVLGTMT
AGGTVDEPIG RHPTKRTHMA VHHSGKPAVT HYRVAEKFRN HTRLRLRLES GRTHQIRVHM
AYIGHVLVGD PVYGGRPKPP KAASPEFFEI LKNFKRQALH AVRLELAHPV TCEIMSWTAP
IPEDMVILTK ALRQDTLEHP VEY
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