| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3101 |
|---|
| Symbol | |
|---|
| ID | 4477817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3720060 |
|---|
| End bp | 3721367 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639727705 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_870731 |
|---|
| Protein GI | 117921539 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA AACCTCCCGT TCATAGTGAA CAATATCCCC AGTCTTATTA TGTTGATACT
GCAAAAGAAA TTTACGCCCA TCCCCAACTT GAGGGCAAGG TAAGCACCGA CGTATGCATT
ATCGGCGGGG GGTTCAGCGG TATTAACACG GCTATCGAAC TGCGGCAAAA GGGCCTAAAC
GTGGTGCTAC TCGAGGCCAA GCGCATAGGC TGGGGCGCCT CAGGGCGTAA TGGTGGCGAG
CTGATCCGCG GTATTGGCCA TGATCCTGCG CAATTTATCA ATGAGATAGG CCAAGAAGGT
GTGAGCGCCA TTGAACAGAT GGGCTTTGAG GCGGTAGAGA TTGTACGAAA TCGGATACAG
ACACATCACA TCGATTGCGA CTTACAAATG GGCTATTGCG ATTTGGCGGT TAAACCTCGG
CATATGCTCG AACTAGAACA AGAGTTCGAC CACCTTAAGC GCCTTGGATA TCAGCATGAA
ATCAAGTTAT TAACTCAGTC TCAGCTCGGA GAAGTTATCG GCTCAGACTT TTACCAAGGC
GCCCTAGTCG ACATGGGCAG CGGTCATTTA CATCCGCTGA ATTTGGCCTT GGGCGAGGCT
CGTGTTGCCC GAGACTTGGG CGCTCAATTA TTTGAATACA GCGCCGCAGA AAAGATTATT
CCTAGGGATA AACCGCGAGT ATTAACGGCA AAAGGCGAAG TGACTTGCCA ATATGTCGTG
CTGGCGGGCA ACGCTTATAT AGGCCATAAA CTGAATAGCT ACATCGGCGG TAAAGTGCTG
CCCGCAGGGA GCTACTTGCT TGCAACCGAG CCACTGACAG AAGTGCAATG CCAAAGCATT
ATCCCGCAAA ATATGGCCTT TGCAGATATG CGAATCGCCT TAGATTACTT TCACTTATCG
GCGGATAGAC GCTTACTCTT CGGCGGACTT TGTACGTATT CAGGCAAAGA TCCTAAGGAT
ATTGAAGCAG CGCTCAGGCC GAACCTTGAG AAGGTATTCC CACAGTTAAA AGGCGTACGC
ATAGATTACG AATGGGGCGG CATGATAGGC ATTGGCGCCA ACCGTATGCC GCAAATCGGT
CGCCTCCCCG ATGCGAGCAA TATTTTTTAC GCCCAAGCCT ATGCAGGCCA CGGCGTAAAT
GCCACCCATA TGGCGGCCAA ACTGCTCGCC GAAGCCATTT GTCAGCAGGC GGGATATTTT
GATGTATTCG CCAAAATCAA GCATATGACC TTCCCCGGCG GCCCCACATT CCGCTCGCCT
ATGCTGGCTG CGGGTATGCT GTACCACAGG TTTAAGGACT TATTCTGA
|
|---|
| Protein sequence | MTTKPPVHSE QYPQSYYVDT AKEIYAHPQL EGKVSTDVCI IGGGFSGINT AIELRQKGLN
VVLLEAKRIG WGASGRNGGE LIRGIGHDPA QFINEIGQEG VSAIEQMGFE AVEIVRNRIQ
THHIDCDLQM GYCDLAVKPR HMLELEQEFD HLKRLGYQHE IKLLTQSQLG EVIGSDFYQG
ALVDMGSGHL HPLNLALGEA RVARDLGAQL FEYSAAEKII PRDKPRVLTA KGEVTCQYVV
LAGNAYIGHK LNSYIGGKVL PAGSYLLATE PLTEVQCQSI IPQNMAFADM RIALDYFHLS
ADRRLLFGGL CTYSGKDPKD IEAALRPNLE KVFPQLKGVR IDYEWGGMIG IGANRMPQIG
RLPDASNIFY AQAYAGHGVN ATHMAAKLLA EAICQQAGYF DVFAKIKHMT FPGGPTFRSP
MLAAGMLYHR FKDLF
|
|---|
| |