Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3087 |
Symbol | |
ID | 4477802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 3699560 |
End bp | 3701419 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639727690 |
Product | RNA polymerase, sigma 70 subunit, RpoD |
Protein accession | YP_870717 |
Protein GI | 117921525 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0259525 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0013173 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTCAAGC TGTTGCTTGC CAAAGGTAAA GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT TCTGACCAGA TCGAAGATAT TATCCAGATG ATAAATGACA TGGGTATTCG GGTGTTCGAA GAAGCACCAG ATGCCGATGA CATGATGATG TCGGAAGACA ACACAGACGA AGATGCAGCG GAAGAAGCCG CAGCCGCCCT TGCCACAGTA GAAAGTGAGC TAGGCCGCAC CACAGACCCA GTGCGTATGT ACATGCGCGA AATGGGTACC GTTGAACTGC TTACCCGTGA AGGCGAAATC GTTATCGCCA AACGCATCGA AGAAGGCATC AACACAGTTC AAAGCTCTGT CGCCGAATAC CCACAAGCGA TCGCCATGAT CCTTGAGCAG TACGACCAGT ACGAAGCCGA CGAACTGCGC CTGTCTGATA TTATCTCTGG ATTTGTTAAC CCGGACGAAG AAGACCTAGG TCCAACCGCG ACTCATATCG GTTCTGAATT ATCGGAAGAA GATCTCGATG ATGAAGATGA CGATGAAGAC GACGAAGACG AAGACGGTGA TGGCGAAGGC GATGACGATG GCAACAAGGG ACCCGATCCT GAAGAAGCGC GTGAACGCTT TAGCCAATTA AGAACCGCCT ACGAAAACGC GCTTAAGATC ATCGATGCCA AAGGTCGTGA ACACCCAGAA TCGATTCAAG CACTGTTTGA AATCGGCGAG ATTTTCAAAG AGTTCCGCCT CGTACCTAAG CAATTCGACC GCTTAGTGAA AAGCATGCGT TCTATGATGG ACCGAGTGCG CGTTCAAGAG CGTCTACTGA TGAAGCTCTG TGTCGAACAG GCCAAAATGC CGAAGAAGAA CTTTGTTAAA TTCTTCACCG GTAACGAAAC CAATCTCGAT TGGTTCGATG CAGAAAAGAA CTCAACTAAG CCTTATGCCG AAGGCTTAAG AATGGTTGAA GAAGACGTTC AGCGTTGCCG TAGCAAGCTG GCCGCCATCG AAGAAGAAAC CGGCTTAGTG ATTGCCGCCA TTAAAGATAT CAACCGTCGT ATGTCAATCG GTGAAGCCAA GGCTCGCCGT GCGAAGAAAG AAATGGTTGA AGCAAACTTA CGTCTGGTAA TTTCTATCGC GAAGAAATAC ACCAACCGTG GTCTGCAATT CTTGGACCTT ATCCAAGAAG GTAACATAGG TCTGATGAAG GCCGTTGATA AGTTCGAATA CCGTCGTGGT TACAAGTTCT CGACCTATGC GACTTGGTGG ATCCGTCAGG CTATCACCCG CTCAATCGCG GACCAAGCCC GTACGATCCG TATTCCAGTA CATATGATCG AAACCATCAA CAAGCTGAAC CGTATCTCTC GTCAAATGCT GCAGGAAATG GGTCGTGAAC CCTCACCTGA AGAACTGGCA GAGCGTATGA TGATGCCGGA AGATAAGATC CGTAAGGTAC TGAAAATCGC TAAAGAACCT ATCTCCATGG AAACCCCAAT CGGTGACGAT GAAGATTCGC ATTTAGGTGA TTTTATCGAG GATACTACCC TCGAATTACC ACTGGACAGC GCCACCAGCG AAAGCCTGAA GAGCGCCACC CATGAGGTTT TAGCAGGCTT AACAGCCCGT GAAGCGAAAG TACTGCGTAT GCGTTTTGGT ATCGATATGA ATACCGACCA CACGCTAGAA GAAGTGGGTA AACAATTTGA CGTAACCCGT GAGCGTATCC GTCAAATCGA GGCGAAAGCC CTACGTAAAC TGCGCCACCC TTCACGTTCG GAAATCTTAA AGTCGTTCTT AGACGAATAG
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Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI VIAKRIEEGI NTVQSSVAEY PQAIAMILEQ YDQYEADELR LSDIISGFVN PDEEDLGPTA THIGSELSEE DLDDEDDDED DEDEDGDGEG DDDGNKGPDP EEARERFSQL RTAYENALKI IDAKGREHPE SIQALFEIGE IFKEFRLVPK QFDRLVKSMR SMMDRVRVQE RLLMKLCVEQ AKMPKKNFVK FFTGNETNLD WFDAEKNSTK PYAEGLRMVE EDVQRCRSKL AAIEEETGLV IAAIKDINRR MSIGEAKARR AKKEMVEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKLN RISRQMLQEM GREPSPEELA ERMMMPEDKI RKVLKIAKEP ISMETPIGDD EDSHLGDFIE DTTLELPLDS ATSESLKSAT HEVLAGLTAR EAKVLRMRFG IDMNTDHTLE EVGKQFDVTR ERIRQIEAKA LRKLRHPSRS EILKSFLDE
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