| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3070 |
|---|
| Symbol | |
|---|
| ID | 4477785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3682211 |
|---|
| End bp | 3683230 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639727673 |
|---|
| Product | aspartate carbamoyltransferase |
|---|
| Protein accession | YP_870700 |
|---|
| Protein GI | 117921508 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
|---|
| TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.177283 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000231142 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGT TCGAAGGATC TCATATCCTC TCCGTAAACC AGTTAGATCT TGATTCAATC
CAAACTATTT TTAATGTTGC CCATCGTATG ATGCCCTATG CACTTCGTGA GAAGCGCACT
AAGGTGCTCG AAGGCGCCAT TTTAGGTAAC CTGTTTTTCG AGCCTAGTAC CCGTACCCGC
GTGAGTTTTG GCTGTGCCTT TAACTTACTC GGCGGCCATG TGCGTGAGAC CACAGGCATG
GCCTCTTCGT CCTTATCTAA GGGTGAGTCA CTGTACGATA CCGCACGTGT ACTCTCGACC
TATTCCGATG TAATTGCGAT GCGCCACCCC GACTCTTATT CGGTGAAAGA GTTTGCTGAA
GGTAGCCGCG TGCCAGTAAT CAACGGTGGT GATGGTTCGA ACGAGCACCC GACCCAAGCC
CTGCTCGATT TGTTCACCAT TCAAAAAGAG TTAGGCCATG CTGGCCGCGG TATCGATGGC
ATGCATATCG CTATGGTCGG CGACTTAAAA TTTGGTCGTA CCGTGCATTC CCTGTCGCGC
TTGCTGTGCA TGTACAAGAA CATCAGCTTC ACACTGATTT CGCCAACTGA ATTAGCAATG
CCTGACTATG TGATCTCCGA CATTGAAAAT GCTGGCCATA GCATCAAAAT AACAGACCAG
CTTGAAGGCC ACTTAGATAA AGCCGACATA CTTTATCTGA CCCGCATTCA AGAAGAGCGC
TTCCCATCCC AGGAAGAAGC GAACAAATAC CGCGGTAAAT TCCGTTTGAA TCGCAGTATT
TATACCCAAC ATTGCAAATC TAACACTGTG ATCATGCACC CGCTGCCACG GGATTCGCGT
GCGCAAGCTA ATGAGTTAGA TAATGATTTG AACAGCCATC CTAATCTCGC TATCTTCAGA
CAGGCGGACA ATGGACTGCT AATTCGTATG GCACTGTTTG CATTGACACT CGGGGTTGAC
TCGCAACTCG AAAAATATGA GTGTCCCGTT AATTGGTATT CACGTAAAGC CGATCGCTAA
|
|---|
| Protein sequence | MNQFEGSHIL SVNQLDLDSI QTIFNVAHRM MPYALREKRT KVLEGAILGN LFFEPSTRTR
VSFGCAFNLL GGHVRETTGM ASSSLSKGES LYDTARVLST YSDVIAMRHP DSYSVKEFAE
GSRVPVINGG DGSNEHPTQA LLDLFTIQKE LGHAGRGIDG MHIAMVGDLK FGRTVHSLSR
LLCMYKNISF TLISPTELAM PDYVISDIEN AGHSIKITDQ LEGHLDKADI LYLTRIQEER
FPSQEEANKY RGKFRLNRSI YTQHCKSNTV IMHPLPRDSR AQANELDNDL NSHPNLAIFR
QADNGLLIRM ALFALTLGVD SQLEKYECPV NWYSRKADR
|
|---|
| |