| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3026 |
|---|
| Symbol | rnc |
|---|
| ID | 4478569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3631428 |
|---|
| End bp | 3632108 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639727630 |
|---|
| Product | ribonuclease III |
|---|
| Protein accession | YP_870657 |
|---|
| Protein GI | 117921465 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0571] dsRNA-specific ribonuclease |
|---|
| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00287209 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCGA TTAAAAATTT GCCACGTTTG TGTCGTACTT TGGGTTATGA GTTCAAGAAT
ATTGATCTCC TCACCCAAGC ATTGACCCAC AGAAGTGCGG CAAATAAGCA CAACGAGCGG
TTAGAGTTTT TAGGCGATTC GATTTTATCG ATAGTGATTT CTGACGCCTT ATACCATCAA
TTTCCTAAGG CGACTGAGGG TGACTTGAGC CGGATGCGCG CGACCTTAGT GCGTGGTGAT
ACGCTCACCT TGATTGCTAA GGCCTTTAAG CTTGGGGATT ATTTATTCTT AGGCCCCGGC
GAGTTAAAGA GTGGTGGTTT TAGACGTGAG TCCATCTTGG CCGATGCGGT CGAGGCGATT
ATCGGCGCAA TCTACTTAGA TTCCGATCTT GAAGTGTGCC GTAAGTTATT ACTGCATTGG
TACGCCGAGC GTTTGGCCGA GATCCAACCC GGTGTGAATC AAAAAGACGC GAAAACCTTA
CTGCAAGAAT ATTTACAAGG GTTAAAGAAG CCGCTACCCG ATTACCAAGT AATCAACATA
GAAGGCGATG CCCACGATCA AACATTCACC GTTGAATGTC GTATAGATGA CTTGAGCGAA
AGCGTGATTG GCGTAGCGAG TTCGCGCCGT AAAGCCGAGC AGATTGCCGC GGCTCAAGTA
TTGGAGTTAC TGAAGAAATG A
|
|---|
| Protein sequence | MEPIKNLPRL CRTLGYEFKN IDLLTQALTH RSAANKHNER LEFLGDSILS IVISDALYHQ
FPKATEGDLS RMRATLVRGD TLTLIAKAFK LGDYLFLGPG ELKSGGFRRE SILADAVEAI
IGAIYLDSDL EVCRKLLLHW YAERLAEIQP GVNQKDAKTL LQEYLQGLKK PLPDYQVINI
EGDAHDQTFT VECRIDDLSE SVIGVASSRR KAEQIAAAQV LELLKK
|
|---|
| |