| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2929 |
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| Symbol | |
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| ID | 4478933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3510732 |
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| End bp | 3513761 |
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| Gene Length | 3030 bp |
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| Protein Length | 1009 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639727534 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_870561 |
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| Protein GI | 117921369 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAA GCATTTTCTT ACCCTTAGTA CAAAATGCGG CGTTATTGCT CGCCTTGGTG
TTTTTGTACG ATGCGATTCC TAAAAAGCAT CAGCGGCAGT ATTTTTTGCT GTGGCGGCTG
GGGATCGGAT TACTCATAGG TGGCATTGGC GTCACTATTA TGAGTACCCC ATGGATGTAC
GAACCCGGCA TTATCTTCGA TACCCGCTCT GTGCTCCTAT GTGTCACCGG CCTGTTTTTT
GGCGGTTTGC CCACCGCCAT CGCCGTTGTG ATGACAGCTA TTTATCGGAT CAGCATTGGC
GGCGCCGCCA TGTGGGTTGG CTTAGGGGTA ATTATTTCCT CAGGCTTGAT TGGGGTGATA
TGGCGCCAGC AACGTAAATC TTACCTTGCC AATATCTCGG GCAGAGAAAT CTTCAGCTTT
GCCTTCGTCG TGCATATCGT CATGTTGTTG TGGTTCTTTT TGCTGCCGGA CAAGGTTGCC
ATTCCCGTGC TGCAAAAAAT CATGTTACCC GTGCTAACCA TTTATCCCCT CGCGACTTGG
CTACTGAGCC GTTTACTCTC CCGCCGTTTT GAGCTGGAGC GTGACGAGCA GATCCGTTTG
CAGGATGATT TCCTGTTCCG CAGCCAATTT AACGTTGGCA ATATCGGGAT TGCCATTACC
GGCGTCGATC AAAAGTGGAT CAAGGTGAAT CCAAGGCTTT GTCAGATGCT GAAATACTCA
GAGGATGAGC TGCTGCATAT GACCTGGAAA CAGCTTACTC ATCCCGATGA TGTTGAGGCG
GATATCGTCA AGTTTGAGCT GATGTTGGCG GGTAAAATCG ATAACTATGA AATGGATAAA
CGTTTTATCG CCAAAGATAA TTCGATTGTA TATACCCATA TGACGGTCGC CTGTAAGCGC
GCGAATCATC AAGTGTTATT GGTGATTGCG GGTTACTTAG ATGTCACCGC CCAGACTCTT
GCCGATAGGG AAGTGCTCGC CAGTCGTGAG CAACTCGAGC TGGTGTTAAG CAGTAGCGAT
TTGGGCGTTT GGGACTGGGA TATCCGTAAT GATCATATCG AGCGTAACGC CCGCAGTGCC
GATATTTTAG GTTGCGATAT CGATATGCTC AACGCCAATA GTCGCCAATG GATGGACTCG
ATTGTCGCCG AGGACAGACC CAAGGTGCTG CACTCCATCG AGGCCCATAT TCGCGGAGAA
ACGCTGCAAC ATAAGATGGA ATATCGCTTA AAAACCCTCA ACCGCGACAT CCGCTGGATT
TTAGATACGG GCAAAGTGGT GAGCCGCGAT GCCAACAACA ACGCCTTAAG AATGTGCGGT
ACCTATACCG ATATCACCGA GGCCAAGCTT ATTGAAGAAT CCCTAAAGCT GTCGGCGCTG
GTCTATGACA ACAGCTCAGA GGCTATGAGT GTGCTCGATG AGACGGGGGT GATCATCACT
GTCAATGCCG CATTTACCGC GATTACGGGT TACAGCGAGT CAGAAATTCG TGGTCAGCAT
ATTCGCCTAC TTTATTGCGA TCTCAACGGT CACGGCTTTT ATACTGAGAT GAATAATGAA
ATTCGCGAAA AAGGTGAGTG GCAGGGGGAG ATGCGCCAGC GACGTAAGAA CAATGAAGAG
TACGTCATTT GGCTCACCAT CAACACCATC AAAGATAAAG ATGGCCAACC TTACCGGCGT
GTGGCGCTGT TTTCTGATAT TACGGATAAA AAGCAGAGCG AGCATTTGAT CTGGAAACAG
GCCAACTACG ACACGCTAAC GGGCTTGCCG AATCGGCGCA TGTTGCTCGA ATATTTAGGC
GCCGAGATCA AGAGTGCCGA CCGCAATCGC AATCATTTTG CCTTGATGTT CCTCGATCTG
GATTACTTTA AAGAAGTGAA CGACACCCTA GGCCATGCCA TGGGGGATCT ATTGCTGATT
GAAACCGCCA GTCGCTTAAA ATCCTGTGTG CGGGATGCCG ATGTGGTGGC GCGCCTCGGC
GGGGATGAGT TTACTGTGGT GCTCAGTTCA ATGGTGGATC ACAAGGGGAT AGAGCGGGTC
GCCGAACATA TTTTAAGGCG CATTGCCGAA CCCTATGTGC TGGGGGAGGA AACCGCCTAT
ATCAGCGCCA GTATTGGCAT TACTCTGTAT CCCGATGATG CGACCAGTAT CGAAGGTCTG
CTCAAACATG CGGATCAGGC CATGTATGCG GCGAAAGATC AGGGCCGCAA TCGTTTCAAC
TATTTCACTC CTTCGATGCA GGAATACGCC AAGTATCGGA TGCGCTTAAT CCAAGATTTG
CGTCAAGCTG TGGTGAGCAA AGAATTTGAA CTGCACTATC AACCCATAGT GACCATGACC
ACGGGCGAGG TGCTTAAGGC CGAAGCGCTA TTGCGTTGGT TTCACCCGGA GCGGGGTTAT
GTCTCCCCTG CGGAGTTTAT TCCCGTCGCT GAAGATACCG GGCTGATTGT CGAGATTGGT
AACTGGGTCT TTGAGCAGGC GGCGCGGCAA AGTGCCCTGT GGCGTAAAAC CTTTGGAGTC
GATATCCAGA TCAGCGTTAA CAAGTCACCT ATCCAGTTCC GCGATGAGGG TACACTGCTG
CACAATTGGC TGGAATTACT GCAGAAATTA GATGTCACCG GCACGGGCGT GTGCGTCGAA
ATTACCGAAG GGTTACTCCT TGATGCCAGT ATGGGCGTCA CCGAAAAGCT CTTGGCCTAT
CGGGATGCGG GCGTACAAGT TTCCCTAGAC GACTTTGGCA CAGGTTATTC GTCCTTGGCG
TATTTGAAGA AGTTCGATAT CGATTATTTA AAAATCGATC AATCTTTTAC CCGCAATATC
GACACCGATG AAAGCGACCA AACCCTGTGC GAAGCCATTA TCGTAATGGC CCATAAATTG
GGAATGAAAG TCATCGCCGA AGGGGTCGAA ACCGAGGCGC AGCGCCAAGT CTTGCTGACT
GCGGGCTGTG ACTATGGTCA GGGCTATTTA TTCTCTAAAC CCGTGAGTGC CACAGAGTTT
GCGAGCAAGT ATTTGGTTAA AGAGGCTTAG
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| Protein sequence | MDKSIFLPLV QNAALLLALV FLYDAIPKKH QRQYFLLWRL GIGLLIGGIG VTIMSTPWMY
EPGIIFDTRS VLLCVTGLFF GGLPTAIAVV MTAIYRISIG GAAMWVGLGV IISSGLIGVI
WRQQRKSYLA NISGREIFSF AFVVHIVMLL WFFLLPDKVA IPVLQKIMLP VLTIYPLATW
LLSRLLSRRF ELERDEQIRL QDDFLFRSQF NVGNIGIAIT GVDQKWIKVN PRLCQMLKYS
EDELLHMTWK QLTHPDDVEA DIVKFELMLA GKIDNYEMDK RFIAKDNSIV YTHMTVACKR
ANHQVLLVIA GYLDVTAQTL ADREVLASRE QLELVLSSSD LGVWDWDIRN DHIERNARSA
DILGCDIDML NANSRQWMDS IVAEDRPKVL HSIEAHIRGE TLQHKMEYRL KTLNRDIRWI
LDTGKVVSRD ANNNALRMCG TYTDITEAKL IEESLKLSAL VYDNSSEAMS VLDETGVIIT
VNAAFTAITG YSESEIRGQH IRLLYCDLNG HGFYTEMNNE IREKGEWQGE MRQRRKNNEE
YVIWLTINTI KDKDGQPYRR VALFSDITDK KQSEHLIWKQ ANYDTLTGLP NRRMLLEYLG
AEIKSADRNR NHFALMFLDL DYFKEVNDTL GHAMGDLLLI ETASRLKSCV RDADVVARLG
GDEFTVVLSS MVDHKGIERV AEHILRRIAE PYVLGEETAY ISASIGITLY PDDATSIEGL
LKHADQAMYA AKDQGRNRFN YFTPSMQEYA KYRMRLIQDL RQAVVSKEFE LHYQPIVTMT
TGEVLKAEAL LRWFHPERGY VSPAEFIPVA EDTGLIVEIG NWVFEQAARQ SALWRKTFGV
DIQISVNKSP IQFRDEGTLL HNWLELLQKL DVTGTGVCVE ITEGLLLDAS MGVTEKLLAY
RDAGVQVSLD DFGTGYSSLA YLKKFDIDYL KIDQSFTRNI DTDESDQTLC EAIIVMAHKL
GMKVIAEGVE TEAQRQVLLT AGCDYGQGYL FSKPVSATEF ASKYLVKEA
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